Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq17567 82.4 1e-10 seq17384 82.4 1e-10 >seq17567 Length=2024 Score = 82.4 bits (90), Expect = 1e-10 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 165225 AGTGGCGGAATTGGTAGACGCGCTGGGTTTAGGTTCCAGTGAATTAATTCGTGGAGGTTC 165284 |||||||||||||| ||||||||||| |||||||||||||| || |||| ||||| Sbjct 191 AGTGGCGGAATTGGCAGACGCGCTGGATTTAGGTTCCAGTGTCTTCGGACGTGAGGGTTC 132 Query 165285 AAGTCCTCTCTTGGGCAC 165302 |||||| ||||| |||| Sbjct 131 AAGTCCCTTCTTGCGCAC 114 >seq17384 Length=2032 Score = 82.4 bits (90), Expect = 1e-10 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 120240 CGGGGTGTAGCTCAGTTTGG-TAGAGCACTCGCTTTGGGAGCGAGTGGCCGTAGGTTCGA 120298 ||||| ||||||||| |||| |||||| | ||||||||||||| | || || |||||||| Sbjct 57 CGGGGCGTAGCTCAGCTTGGCTAGAGCGCCCGCTTTGGGAGCGGGAGGTCGCAGGTTCGA 116 Query 120299 ATCCTATCACCCCGA 120313 ||||| || |||||| Sbjct 117 ATCCTGTCGCCCCGA 131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627704575273600