Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq32018 145 1e-29 >seq32018 Length=6499 Score = 145 bits (160), Expect = 1e-29 Identities = 222/315 (70%), Gaps = 6/315 (2%) Strand=Plus/Plus Query 193878 GTAGCAAAGTTGTATGGTTATTGGATCATCAAGAATTATCGTGAGTCATATGGATTCCAC 193937 || ||||| |||||||||||||||| | ||||| |||||| | || | Sbjct 3436 GTTGCAAAAATGTATGGTTATTGGATTGTTGTCAATTACCGTGAGGCTTACAATATGTTT 3495 Query 193938 GCTAGTTCTGGTATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTGTAACT 193997 ||| || ||| ||||| |||||||| ||||||||||||||||| || || ||||| || Sbjct 3496 GCTTGTAATGGAATTCTTTTCAATCATGAATCTCCAAGAAGAGGAGAAACCTTTGTGACA 3555 Query 193998 CGTAAGATTACACAAGGTT---TATCTAAGATCTCTGTTGGATTACAGAAGATTCTTTAT 194054 || || || || | ||| | | || ||| | | ||| ||| | | || | Sbjct 3556 CGAAAAATCACCC---GTTCGGTCGCCAAAATCAGTTTAGGACAACAAGAATGTGTTGAA 3612 Query 194055 CTTGGTAATCTTAATGCTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAAGCGATG 194114 ||||| || | | |||| ||| ||||||||||| || | || ||||||||||| ||| Sbjct 3613 CTTGGAAACTTGAGTGCTTTGAGAGATTGGGGACATGCGAGAGAATATGTTGAAGCAATG 3672 Query 194115 TGGTTAATGTTGCAACAGGATGAACCCGATGATTATGTGATTGCTACAGGTGAACAGTAT 194174 ||| ||| |||||| | || |||| ||||||| ||||||||| || || |||| | | Sbjct 3673 TGGAGAATTTTGCAAAACGACAAACCTGATGATTTTGTGATTGCGACCGGAAAACAATTT 3732 Query 194175 TCTGTTAGAGACTTT 194189 ||| ||||| ||| Sbjct 3733 AGTGTCAGAGAGTTT 3747 Score = 113 bits (124), Expect = 7e-20 Identities = 177/249 (71%), Gaps = 6/249 (2%) Strand=Plus/Plus Query 193633 CAGTTGAACCTGCTGAGATCTATAATCTTGGTGCTCAAAGTCATGTTAAAGTTTCCTTTG 193692 || ||||||| |||| ||||| || | | |||||| |||||| ||||||||||||| Sbjct 3051 CAATTGAACCAACTGAAGTCTATCATTTGGCAGCTCAATCTCATGTCAAAGTTTCCTTTG 3110 Query 193693 AGATGCCAGAGTATACTTCTAATGTTGATGCTTTAGGAACTCTTAGAATACTTGAAGCAG 193752 | | || || ||||| || | |||||||| | ||||||||| || | || || ||| Sbjct 3111 ATCTTCCTGAATATACAGCTGAAGTTGATGCGATTGGAACTCTTCGACTTCTCGATGCAA 3170 Query 193753 TTCGTATG-TTGGGAATGGA--GAAAGATGTTCGCATCTATCAGGCATCTACCAGCGAAC 193809 ||| | | ||| ||| || |||| | || | ||||||| || || || |||| Sbjct 3171 TTC--ACGCTTGCAAATTGACTGAAA-AAGTCAGATTCTATCAAGCTTCAACTTCCGAAT 3227 Query 193810 TGTATGGTGGTGTTCTAGGCACTCCACTATCAGAAACCACACCATTTCATCCACGCTCTC 193869 ||||||| |||| || | ||||| ||| |||| || |||||| ||||| | || Sbjct 3228 TGTATGGAAAAGTTCAAGAGATTCCACAATCCGAAAAAACTCCATTTTATCCAAGAAGTC 3287 Query 193870 CTTATGGTG 193878 | ||||||| Sbjct 3288 CATATGGTG 3296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807216440688040