Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq32583 152 5e-32 >seq32583 Length=15821 Score = 152 bits (168), Expect = 5e-32 Identities = 374/566 (66%), Gaps = 25/566 (4%) Strand=Plus/Plus Query 21286 ACAACCCAGTTCTGATAATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTC 21345 |||||||| ||| || || ||| || |||||||| |||||||| |||| | | Sbjct 6665 ACAACCCAATTCAACCAACAAATGATCAGCAACAAATTCGATATATTGTGACATAAGTCG 6724 Query 21346 ACAATTCATACCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGA 21405 |||||||||||| |||| | ||||| | ||| | ||||| || || ||| || || Sbjct 6725 ACAATTCATACCAATCATATCAACAGGCAAAGCCTCAGTCAAGAATTCTTGTTCGATTGA 6784 Query 21406 GACGGCTTCAACAATTATATTTATTATCCTAGAT--GTACTAGGGGGATACAATAATTGT 21463 |||||| || | ||| || || ||||| || || || | | | ||| | Sbjct 6785 GACGGCATCTT---TGATAATT----TCATAGATTCGTTCTTGGCTCA---ATTTATT-T 6833 Query 21464 TTAAACATCAAA---------CATGCAAAATCACAATGCAAACCTTCATCCCTACTTATT 21514 | || |||| || || || ||||||| || | ||||| || || || Sbjct 6834 TGAAGCATCGAATACAAAAGACAAGCGAAATCACGGTGAAGTCCTTCGTCTCTTGAAATG 6893 Query 21515 AATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGAC 21574 | ||||| ||| || || || ||||| |||||||||||||| ||||| || ||||| Sbjct 6894 AGCTCATTTGAATGAGTCAATCCTGGCATCAATCCTCTCTTTTTCAACCAGAAAATTGAG 6953 Query 21575 GCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCG 21634 ||||||| || || ||||| || || || || ||||||||||||| ||||| |||| | Sbjct 6954 GCAAATGAGCCGGAGAAGAATATTCCTTCGACAGCAGCAAATGCAATTAATCTTTCAGCA 7013 Query 21635 TATGTAGATTCTTTATCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAA 21694 ||| | | |||||| | |||||||| ||||| | ||||| | ||| || | Sbjct 7014 AATGATGCATTTTTATCAGAAATCCATTTCAAGGCCCAATCAGCCTTCTTTTTGATGAAT 7073 Query 21695 TC-AATTGTATCAATAGCTTTTAAAAGATGAtttttttCATCTACATCGGTTATGNNNNN 21753 || |||| | ||| || || ||||| || | |||| | | ||||| || Sbjct 7074 TCGAATTCGA-AAATTGCATTGAAAAGTGAATGTCTTTCTTGTTCATCGCGAATATAAGT 7132 Query 21754 NNNNNNNNNNNNACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTA 21813 ||||||||| ||||| || ||||| || || || || ||||| || Sbjct 7133 TTCAATCAATTTTGAATACATTTCTGAATGAATGTTTTCAATTGCAATTTGGAATCCATA 7192 Query 21814 AAAACATCTTGCCTCTGA-ACATTGA 21838 ||| ||| || ||||| || |||| Sbjct 7193 AAAGAATCGGGCTTCTGAGACTTTGA 7218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531677674263160