Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq31956 223 4e-53 seq32583 149 8e-31 >seq31956 Length=51777 Score = 223 bits (246), Expect = 4e-53 Identities = 570/856 (67%), Gaps = 19/856 (2%) Strand=Plus/Plus Query 62604 GCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTT 62663 ||| | |||||||| | || |||||| | |||||||| |||||||| ||| || || Sbjct 35790 GCTTGCTCACAACTTTCATCCAATGCAGCATAATAAATTGTTTCGAAAATCCGTTTGTTC 35849 Query 62664 AGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAAT 62723 | |||| || | | | |||||||| | | || || || || || ||| Sbjct 35850 AAATCTCTGGCAGCTTGAGAAGTGAATGGATATCTCATAAGCATGAAACAATCTGCCAAT 35909 Query 62724 CCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATA 62783 ||||| ||||| | || || || | ||| | | |||| || ||| ||||| |||| Sbjct 35910 CCTTGTACACCTAATCCAATTGGACGATGACGCATATTTGAATTTTTGGCTTCAGGAACT 35969 Query 62784 GGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCC 62843 ||||||||||| || || || || || || | ||||| | | | || || Sbjct 35970 GGATAATAATTGATGTCAATGATCTTGTTCAAGTTTCTTGTGAGAGCGCGAGCAACTTCA 36029 Query 62844 TTCAGTTTGAGAAAATCAAATCGCCCATCTA---TTACAAACATGTTCAAGGCAACAGAT 62900 ||||||| ||||| || | || ||||||| ||||| |||| ||| Sbjct 36030 GCGAGTTTGACGAAATCGAAAGTCTTTTCAGGGGTTACAAATCGATTCAACGCAATTGAT 36089 Query 62901 GCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGA 62960 |||| ||||||||| || || |||| | | || | || || || |||||||| | | Sbjct 36090 GCCAAATTACAAACCGCAACTTCATCTGGACTCGAAACTTCCATAATTTCAGTGCACAAA 36149 Query 62961 TTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTA 63020 || || || || ||||| | ||||||||||||| | ||| ||| |||||| ||| Sbjct 36150 TTCGAGCATTTAATTGTTCCAATATTTTGTTGATTAGTTTTTCGATTAGCCGCATCTTTA 36209 Query 63021 TAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATA-ATC--GCTTTCCAGACG 63077 || || | || | ||||| ||||| ||| ||| ||| | | ||| ||| | Sbjct 36210 TATGTGATATAAGGCATTCCAGTCTCAATTTGA--TTCGATACAACATGCTC-CCACAAT 36266 Query 63078 ACTCGAGCCTTTATTATAGATTTGTATCTCCTTTC--TCTTTCGTATAGT--GTATACAA 63133 || || || | || ||| | || | |||| |||||| ||| | || || | Sbjct 36267 TTTCTCGCTTTCAC---AGTTTT-TCTCACTTTTCCCTCTTTCTCATATTTGGTGTAAAG 36322 Query 63134 TCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAA 63193 ||||||||| || |||||||| | || | ||| ||||||| || ||||| | Sbjct 36323 AGCTTCGAACTCTTCACCCCAAACTTCATCGAGTCCTTGACATTCGCAAGGGCACATTAG 36382 Query 63194 CGACCACTCTCCGTCATCCTTC-ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTA 63252 |||||| ||| |||| || ||| || |||||||| || | ||| || | ||||||||| | Sbjct 36383 CGACCAATCTTCGTC-TCTTTCGACGCGTTTCATGAACAAATCTGGGACCCAAAGAGCCA 36441 Query 63253 TAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACG 63312 || ||||| | | ||| | ||| || || || || || ||| ||| ||| Sbjct 36442 GGAAAAGATCGCGAGCTCTCTCTTCTTCTGGGCCAGTGTTTTTGCGGAGAGCGACGAATT 36501 Query 63313 CCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTC 63372 | | |||||| | |||||| ||||| | || || || | | || || |||||||||| Sbjct 36502 CGAAAATATCGGCATGCCATGGTTCGAGATAAATAGCAAAGGCACCTGGACGTTTGTTTC 36561 Query 63373 CTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGT 63432 | || ||||| | ||||| || ||||| || ||||| | | |||||||| || ||| | Sbjct 36562 CACCTTGATCGACATATCTGGCTGTGTTGTTGTAAACGCGAAGCATTGGAACAAGACCAT 36621 Query 63433 TTGATATACCATTGGT 63448 ||||| | || ||||| Sbjct 36622 TTGATGTTCCGTTGGT 36637 Score = 141 bits (156), Expect = 1e-28 Identities = 297/439 (68%), Gaps = 9/439 (2%) Strand=Plus/Plus Query 62016 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 62075 || ||||| || | | ||| |||||||| || || | || |||| || || ||| Sbjct 35147 GCTGGTTTTGTTCTCAAATAATACATTCCAGTCTTCAATCCCTTCTTCCAACCATAGAAA 35206 Query 62076 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 62135 ||||| || | || |||||| || | || ||||| ||||||| | ||| | Sbjct 35207 TGCATTGATGTGATCGCGGCATAACTTGGTTTAGCCATATGAATATTCAAACTTTGTGAT 35266 Query 62136 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 62195 ||||| ||||| ||||| | ||||||||||| | || ||| ||||| | |||||| Sbjct 35267 TGATCAATGAAAGCTCCGCGATCTGCAGCCATCTCAATAATCTCTTTTTGCGATATTTCC 35326 Query 62196 CAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGTTTG-----TATTCTGAATG 62249 |||| ||||| || ||||| || || || ||||| |||| |||| ||||| Sbjct 35327 CAAACTGTTTTGTACAACTC-TTTGATTTCAGTTGGAA--TTTGTTCAATATTTTGAATC 35383 Query 62250 GATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTT 62309 |||||| || || | | ||| || || ||||||| ||||||| || Sbjct 35384 GATCCATTGCTGGCAATCAATCGATTTTTCATATCATCATCCCATAATCCAAGTTCAACC 35443 Query 62310 AAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTG 62369 ||| | | | | ||| ||||| || | ||| || || |||||||| || | |||| Sbjct 35444 AAATCCTTCAACAAATGTGGATTGACAATTTGGAAATCGCCAGACAAAACACGTCGAGAA 35503 Query 62370 TAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGAT 62429 || ||||| || || ||||| | |||||||| ||||| | |||||||| || || Sbjct 35504 TAGATATTGGAAGTGTATGGTTCAATTGACTCATTGTTTCCGAGGATTTGAGCTGTGGAA 35563 Query 62430 GCAGTCGGCATAGGTGCCA 62448 ||||| ||||| || |||| Sbjct 35564 GCAGTTGGCATTGGAGCCA 35582 >seq32583 Length=15821 Score = 149 bits (164), Expect = 8e-31 Identities = 360/540 (67%), Gaps = 29/540 (5%) Strand=Plus/Plus Query 33118 CCCAATTCAGAAATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAA 33177 ||||||||| | ||| ||| || || ||||| |||||| | ||| | | |||| Sbjct 6669 CCCAATTCAACCAACAAATGATCAGCAACAAATTCGATATATTGTGACATAAGTCGACAA 6728 Query 33178 TTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACC 33237 ||||| || || | | ||| || | |||| |||| | ||||||||||| || || || Sbjct 6729 TTCATACCAATCATATCAACAGGCAAAGCCTCAGTCAAGAATTCTTGTTCGATTGAGACG 6788 Query 33238 GCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAAC 33297 |||||| | ||||| | | | ||| | || ||| | |||| || || || | Sbjct 6789 GCATCTTTGATAATT----TCATAGATTCGTT-CT---TGGCT-CAATTTATTTTGAAGC 6839 Query 33298 ATCAAA---------CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCG 33348 ||| || || |||||||| | ||| || || |||||||| ||| || || Sbjct 6840 ATCGAATACAAAAGACAAGCGAAATCACGGTGAAGTCCTTCGTCTCTTGAAATGAGCTCA 6899 Query 33349 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAAT 33408 || ||| || | ||| ||||| | || | |||||| | ||| || || || || ||| Sbjct 6900 TTTGAATGAGTCAATCCTGGCATCAATCCTCTCTTTTTCAACCAGAAAATTGAGGCAAAT 6959 Query 33409 GATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCG 33468 || || || ||||| |||||||| || |||||||| ||||| | ||| || || | Sbjct 6960 GAGCCGGAGAAGAATATTCCTTCGACAGCAGCAAATGCAATTAATCTTTCAGCAAATGAT 7019 Query 33469 GCGCTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATC 33525 || | | || ||||| || |||||||| ||||||||||| | | || Sbjct 7020 GCATTTTTATCAGAAATCCATTTCAAGGCCCAATCAGCCTTCTTTTT----GATGAATTC 7075 Query 33526 G-TTTC---TATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATC 33581 | ||| || ||||| || || | | | |||| | ||| || |||||| || Sbjct 7076 GAATTCGAAAATTGCATTGAAAAGTGAATGTCTTTCTTGTTCATCGCGAATATAAGTTTC 7135 Query 33582 GATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAA 33641 ||||| ||||||||| ||||||||||||||||| || || || ||||| || || Sbjct 7136 AATCAATTTTGAATACATTTCTGAATGAATGTTTTCAATTGCAATTTGGAATCCATAAAA 7195 Score = 104 bits (114), Expect = 3e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 33686 CCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAA 33745 |||| |||||||| || ||||| ||| || || ||||| ||||| ||| | | || Sbjct 7395 CCAAGTTTTCATTGACAATTCCATCAGAAGCAGCGAAAAATGCCAAAACACGAGAAACAA 7454 Query 33746 AATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTT 33805 | ||| ||| ||| | | ||| | |||||| || |||||||| | ||| |||| Sbjct 7455 AGAATTGTTCATCTCCGTTCATTTTTTCCCAATCTTTCATATCTTTTCCCAAATCAACTT 7514 Query 33806 CTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATAATATT 33865 |||| || ||||| |||||||| | ||||| || || | | ||| || || || || Sbjct 7515 CTTCAACAGTCCAGAATGATGCAACAGCCTTCTTGTAAAACTCCCAAATTGTATGATGTT 7574 Query 33866 GGATTGGGAAAATAACAAATCTATT 33890 || |||||||||||| |||| ||| Sbjct 7575 TGAGTGGGAAAATAACGAATCGATT 7599 Score = 93.3 bits (102), Expect = 5e-14 Identities = 106/142 (75%), Gaps = 3/142 (2%) Strand=Plus/Plus Query 32954 TTCTTTAAAAGTCAACATCTAAAGAAAAATGATTATC---TTCTTGAGACATAACTCCCA 33010 || |||| |||||| | || | | ||| ||| || ||||| | |||||| || Sbjct 6427 TTGTTTAGAAGTCAGCTTCGAGATCAAATTGACGTTCAGATTCTTTTGTCATAACACCAG 6486 Query 33011 TTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATAT 33070 | |||| ||||| |||||||| ||||| ||||| |||||||| || | |||||||| Sbjct 6487 GTCTTTGATATTCGGAAACACGTTTCTCGAAGAAATTTGTTTTTCCGTCGATTGATATAT 6546 Query 33071 TTTCCATGAAATCAAACGGATT 33092 ||||||||||||| || ||||| Sbjct 6547 TTTCCATGAAATCGAATGGATT 6568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622685881436440