Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq31956 134 4e-26 seq30640 107 5e-18 seq32786 93.3 1e-13 seq32583 84.2 6e-11 >seq31956 Length=51777 Score = 134 bits (148), Expect = 4e-26 Identities = 229/332 (69%), Gaps = 0/332 (0%) Strand=Plus/Minus Query 363760 TCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAG 363819 || ||||| || ||||| |||||||| || | |||| || || || || ||||| || Sbjct 36625 TCAAATGGTCTTGTTCCAATGCTTCGCGTTTACAACAACACAGCCAGATATGTCGATCAA 36566 Query 363820 GGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATT 363879 |||||| || || ||| || |||||||| |||||||| || |||||||||||| Sbjct 36565 GGTGGAAACAAACGTCCAGGTGCCTTTGCTATTTATCTCGAACCATGGCATGCCGATATT 36506 Query 363880 TTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTG 363939 || || || | | ||||| |||||||| || ||| ||| | | || || ||||| Sbjct 36505 TTCGAATTCGTCGCTCTCCGCAAAAACACTGGCCCAGAAGAAGAGAGAGCTCGCGATCTT 36446 Query 363940 TTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGG 363999 ||| || |||||||| | || || ||||| ||||| || || | ||||| Sbjct 36445 TTCCTGGCTCTTTGGGTCCCAGATTTGTTCATGAAACGCGTCGAAAGAGACGAAGATTGG 36386 Query 364000 TCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTT 364059 || || | ||||| |||||||| ||| || || || |||||||| || | | Sbjct 36385 TCGCTAATGTGCCCTTGCGAATGTCAAGGACTCGATGAAGTTTGGGGTGAAGAGTTCGAA 36326 Query 364060 GCTCTATACGAAAAGTATGAATCGGAGGGAAA 364091 ||||| ||| || ||||| |||||||| Sbjct 36325 GCTCTTTACACCAAATATGAGAAAGAGGGAAA 36294 Score = 122 bits (134), Expect = 2e-22 Identities = 208/298 (70%), Gaps = 4/298 (1%) Strand=Plus/Minus Query 363430 ATCAATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATC 363489 ||| ||| | | || || |||||||| || || ||||| ||| | ||| || |||| || Sbjct 37008 ATCGATGATCAAATCGTCGAACGCCCACAACAAATGTTGATGAGAGTTTCTGTTGGAATT 36949 Query 363490 CATTGCCCGGATGTTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTG-TAT- 363547 || | ||||||||||| || || ||||| || || || | || | | ||| Sbjct 36948 CACGGAGACGATGTTGATGCAGCCATCGAAACCTACAATCT--CATGTCGGAGAGATATA 36891 Query 363548 TCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTT 363607 | || || || |||||||| ||| ||| | ||||||||| ||||| ||||| |||| Sbjct 36890 TGACACATGCTTCGCCAACATTGTTCAACTCGGGAACTCGTCGGCCACAAATGTCATCTT 36831 Query 363608 GCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATT 363667 ||||| | |||| ||||| || ||||| ||| ||| |||| || || || || | | Sbjct 36830 GCTTTTTGCTAACAATGAGCGATGATTCGATCTTGGGAATCTACGATACTCTGAAACAAT 36771 Query 363668 GTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC 363725 |||| | || || || ||||| || ||||| ||| | | ||||| ||||||| Sbjct 36770 GTGCATTGATCTCGAAAAATGCTGGTGGAATCGGTTTGAATGTACACAAGATTCGTGC 36713 >seq30640 Length=8310 Score = 107 bits (118), Expect = 5e-18 Identities = 106/133 (80%), Gaps = 3/133 (2%) Strand=Plus/Plus Query 27233 GTTACGAAGGCGCAATTGTTATTGATGCAAAATCGGGGTTTT-ATACGGATCCAGTCGCC 27291 |||| ||||| |||| ||| |||||| ||| ||| |||||| ||| || ||| |||| Sbjct 17 GTTATGAAGGTGCAACTGTAATTGATCCAAT-TCGAGGTTTTTATAATGAACCAATCGCA 75 Query 27292 ACACTTGACTTTGCATCACTATATCCATCAATTATGCTTGCTCACAATTTATGTTACTCA 27351 || ||||| ||||||||||| ||||| ||||||||| |||| || ||||| ||||| || Sbjct 76 ACTCTTGATTTTGCATCACTTTATCCTTCAATTATGATTGCACATAATTTGTGTTATACA 135 Query 27352 ACCTTTGTTGAAA 27364 | || | |||||| Sbjct 136 A-CTCTTTTGAAA 147 >seq32786 Length=16869 Score = 93.3 bits (102), Expect = 1e-13 Identities = 129/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 111762 GGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCAT 111821 ||||| ||||| || || ||| | || || |||| || || || | | || |||||| Sbjct 9122 GGTCTCGGTGTCCCATTCAATTTGGCCAGCTACGGTCTTCTCACCCACATGATTGCTCAT 9181 Query 111822 TTTACAAATCTCAAACCGGGTGAATTCATTCACGTTATCGGAGATGCGCATGTTTACACA 111881 |||| ||||| ||| | |||||||| | ||| | | || ||||| |||||||| | Sbjct 9182 ATTACGAATCTAAAAGCTGGTGAATTGGTGCACACTTTGGGTGATGCTCATGTTTATTCG 9241 Query 111882 AACCACATTGATGCACTTAAAACACAGTTGAAGCGCAAACCATACGATTTCCCAACGATT 111941 || ||||||||||| ||| ||| || ||| | || |||| | | ||||||| ||| Sbjct 9242 AATCACATTGATGCTCTTCAAATTCAATTGGAACGAGAACCTTTTGCATTCCCAAAAATT 9301 Query 111942 C 111942 | Sbjct 9302 C 9302 >seq32583 Length=15821 Score = 84.2 bits (92), Expect = 6e-11 Identities = 157/229 (69%), Gaps = 10/229 (4%) Strand=Plus/Minus Query 22423 ATTC-AATCAATTAAGAATAAGGCAGATTGGGCGCTGAAATGGATG------AACAATGA 22475 |||| ||| || || || ||||| |||||||| |||||||||| || |||| Sbjct 7079 ATTCGAATTCATCAAAAAGAAGGCTGATTGGGCCTTGAAATGGATTTCTGATAAAAATGC 7020 Query 22476 ACGTTCATTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGG 22535 | ||||| || ||| | | ||||||||||||| || ||||| || ||||| || || Sbjct 7019 A---TCATTTGCTGAAAGATTAATTGCATTTGCTGCTGTCGAAGGAATATTCTTCTCCGG 6963 Query 22536 AGCATTTTGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTC 22595 ||||| |||| || ||| | ||||| | | | | ||||| || | || ||| Sbjct 6962 CTCATTTGCCTCAATTTTCTGGTTGAAAAAGAGAGGATTGATGCCAGGATTGACTCATTC 6903 Query 22596 AAATGAGTTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGT 22644 ||||||| | ||| |||| || || ||||| ||||| || ||| Sbjct 6902 AAATGAGCTCATTTCAAGAGACGAAGGACTTCACCGTGATTTCGCTTGT 6854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302793190943138