Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq13386 152 4e-32 seq30935 107 2e-18 >seq13386 Length=19191 Score = 152 bits (168), Expect = 4e-32 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||| ||||| || ||||||||| | || || | |||||||| || Sbjct 14203 AATGCAAATCTTTGTCAAAACTTTGACTGGAAAAACCATCACTTTGGAAGTCGAAGCTTC 14144 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || ||||| ||| | ||||| ||||| ||||| ||||| || || || || || Sbjct 14143 TGATACCATTGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATTCCACCAGACCA 14084 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| ||| |||| | || ||| || ||| | ||||||| |||| | || ||| || || Sbjct 14083 ACAAAGATTGATCTTCGCCGGAAAACAATTGGAAGATGGAAGAACCCTCTCCGACTACAA 14024 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||| ||||||||||| ||| |||| || || || ||||||||||||||| Sbjct 14023 CATCCAAAAAGAATCAACACTTCACTTGGTTTTGAGATTGAGAGGAGGA 13975 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || | || || ||| | || ||| | |||||||| || Sbjct 13237 ATGCAAATTTTCGTCAAGACCCTCACCGGCAAAACTATCACCTTGGAAGTCGAAGCTTCT 13178 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | ||||| ||||| ||||||||||| || || || || ||| Sbjct 13177 GACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAAGAAGGAATTCCACCAGACCAA 13118 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || ||| |||| | || ||| || ||| | ||||||| ||||| | | |||||||| Sbjct 13117 CAAAGATTGATCTTCGCCGGAAAACAATTGGAAGATGGCAGAACCCTTTCGGATTATAAT 13058 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 |||||||| ||||| ||| | || || || || ||||||||||||||| Sbjct 13057 ATTCAAAAGGAATCAACACTCCACTTGGTTTTGAGATTGAGAGGAGGA 13010 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| ||||| || || ||||| | || ||| | ||||| ||||| Sbjct 12425 ATGCAAATCTTTGTCAAAACTTTGACCGGAAAGACCATCACCCTTGAAGTTGAGGCTTCT 12366 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || |||||||| | |||||| || ||| ||||||||||| || || || || ||| Sbjct 12365 GATACCATCGAAAATGTCAAAGCTAAAATTCAAGACAAAGAAGGAATCCCACCAGACCAA 12306 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || ||| |||| | || ||| || ||| | ||||| | |||| | || ||| || ||| Sbjct 12305 CAAAGATTGATCTTCGCCGGAAAACAATTGGAAGACGGAAGAACCCTCTCCGACTACAAC 12246 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 |||||||||||||| ||| | || || || | | | ||||||||| Sbjct 12245 ATTCAAAAAGAATCAACACTCCACTTGGTTCTTCGTCTCAGAGGAGGA 12198 Score = 98.7 bits (108), Expect = 9e-16 Identities = 151/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | || || || ||| | ||||||||| | || || | ||||| || || Sbjct 13975 AATGCAAATCTTCGTCAAGACACTCACTGGAAAAACAATCACACTTGAAGTTGAAGCTTC 13916 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||||||||| | |||||| ||||| ||||| ||||| || || || ||||| Sbjct 13915 TGACACCATCGAAAATGTCAAAGCTAAGATCCAAGACAAGGAAGGAATCCCACCAGATCA 13856 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT-GACAGA-AACGTCAGCGATTAT 24167 ||| | || |||| | ||| || ||| | |||||| ||| | | ||| ||||| Sbjct 13855 ACAACGTCTCATTTTTGCCGGAAAACAATTGGAAGATGGACGCACATTGTC--TGATTAC 13798 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGT 24199 ||||| ||||| |||||||| |||| || || Sbjct 13797 AACATCCAAAAGGAATCTACCCTTCACTTGGT 13766 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | || || || || | || || ||| | || ||| | |||||||| ||| Sbjct 12198 AATGCAAATTTTCGTCAAGACCCTCACCGGCAAAACCATCACCTTGGAAGTCGAAGCCTC 12139 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||||||||| | ||||| ||||| ||||| ||||| || || || ||||| Sbjct 12138 TGACACCATCGAAAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCAGATCA 12079 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| | || || | || ||| || ||| | ||||||| | | || ||| || || Sbjct 12078 ACAACGTCTCATCTTCGCCGGAAAACAATTGGAAGATGGTCGCACTCTCTCCGACTACAA 12019 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGT 24199 ||| ||||| ||||| || ||||||| || Sbjct 12018 CATCCAAAAGGAATCGACTCTTCATTTGGT 11989 >seq30935 Length=6295 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || | || || || | |||||| |||||||||||||| Sbjct 1268 ATGCAAATCTTCGTCAAGACTCTGACGGGTAAGACAATTACCCTCGAAGTCGAGGCCTCG 1327 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | |||||| ||||| ||||| ||||| || || || |||||| Sbjct 1328 GACACCATCGAAAATGTCAAAGCCAAGATCCAAGACAAGGAAGGAATCCCACCAGATCAA 1387 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || ||| |||| | || ||| || |||||||| |||| | | | ||| || ||| Sbjct 1388 CAAAGATTGATCTTCGCCGGAAAACAACTCGAGGATGGACGTACTCTTTCCGACTACAAC 1447 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 || ||||| || || || |||| || || Sbjct 1448 ATCCAAAAGGAGTCGACCCTTCACTTGGT 1476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429760156041645