Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_008194.1 Length=74483 Score E Sequences producing significant alignments: (Bits) Value seq17056 389 2e-103 >seq17056 Length=1684 Score = 389 bits (430), Expect = 2e-103 Identities = 560/782 (72%), Gaps = 17/782 (2%) Strand=Plus/Plus Query 65390 GTGGACGTCATTCCCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTAC 65449 || || || || || ||||| || ||||| ||||||| ||| || |||||||| ||| | Sbjct 419 GTCGAGGTGATCCCGACCGGTTCGATCGCACTGGACGTCGCGCTCGGCATCGGCGGGCTC 478 Query 65450 CCGAGGGGCCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTATGT 65509 ||| | ||||| | | || |||||||| || || || || || ||| | ||||| Sbjct 479 CCGCGCGGCCGCATCATCGAGATCTACGGTCCGGAGTCCTCGGGCAAGACCACTCTCACG 538 Query 65510 CTCCACGCGGTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAG 65569 || |||||| | || || |||||| ||||| |||| |||||| | ||||||||| ||| Sbjct 539 CTGCACGCGATCGCGAACGCGCAGCGCGCCGGCGGCATCGCCGCGTTCATCGACGCCGAG 598 Query 65570 CACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTG 65629 ||| | || ||||| |||||||| || |||||| || ||| |||| || | || Sbjct 599 CACGCGCTCGACCCCGAGTACGCGCAGAAGCTCGGCGTCGACATCGATTCGCTGCTCGTC 658 Query 65630 GTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGC 65689 ||||| ||||| || |||||||| || ||||||| ||| | || || || || Sbjct 659 TCGCAGCCCGACACGGGTGAGCAGGCGCTCGAGATCGCCGACATGCTGATCCGTTCGGGG 718 Query 65690 GAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAA 65749 | | | | ||||| | ||||| || ||||| || |||||| |||||| |||| Sbjct 719 TCGGTCGACCTGATCGTCATCGACTCGGTCGCGGCGCTCGTGCCGAAGGCCGAGATCGAG 778 Query 65750 GGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGC 65809 ||||| || || ||||| ||||| |||||||| ||||| |||||||||||||| | ||| Sbjct 779 GGCGAGATGGGCGACAGCCACGTGGGCCTGCAGGCGCGACTCATGTCGCAGGCGCTCCGC 838 Query 65810 AAGCTCACTGGCACCATCT---CCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTG 65866 ||| | || ||| ||| |||| ||||| || || ||| |||||||| | Sbjct 839 AAGATGACGGGCGG--TCTGAACCAG-ACCAAGACCACCGCGATCTTCATCAACCAGCTC 895 Query 65867 CGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAACGAGACCACCACGGGCGGCAAGGCT 65926 ||||||||| ||||| | | | | |||| |||||| ||| |||| |||||||| Sbjct 896 CGCGAGAAGGTCGGCGTCTTCTTCGGCAGCCC---CGAGACGACCTCGGGGGGCAAGGCG 952 Query 65927 TTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGC 65986 | | ||||||||| || ||||| | || |||| |||||| ||| |||||| ||| Sbjct 953 CTCAAGTTCTACGCGTCGGTCCGTCTCGACATCCGCCGCATCCAGACCCTGAAGGACGGC 1012 Query 65987 GATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCG 66046 | || || ||||||||||||||||| || |||||||||||||||||| |||| || || Sbjct 1013 CAGGACGCGGTCGGCAACCGCACCCGCGTCAAGGTCGTCAAGAACAAGATGGCTCCCCCC 1072 Query 66047 CACCGCAACGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGG--TCGAAC 66104 | | ||||||||| | || | ||||| | |||||||| || |||| ||| | Sbjct 1073 TTCAAGCAGGCCGAGTTCGACATCCTCTACGGCGTCGGCATCTCTCGCGAGGGTTCG--C 1130 Query 66105 TCCTCGACCTGGCCGTGTC--GCAGGGCCTGGTGAAGAAGTCGGGCGCCTGGTTCAAGTA 66162 || ||||| | | ||||| ||| || || || |||||| || |||||| || || Sbjct 1131 TCATCGACTT--CGGTGTCGAGCACGGTCTCGTCAAGAAGAGCGGTTCCTGGTACACCTA 1188 Query 66163 CG 66164 || Sbjct 1189 CG 1190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 238123367618356