Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq31956 242 5e-59 seq32583 161 1e-34 >seq31956 Length=51777 Score = 242 bits (268), Expect = 5e-59 Identities = 575/857 (67%), Gaps = 19/857 (2%) Strand=Plus/Plus Query 62459 GCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTT 62518 ||| | |||||||| | || |||||| | |||||||| |||||||| ||| || || Sbjct 35790 GCTTGCTCACAACTTTCATCCAATGCAGCATAATAAATTGTTTCGAAAATCCGTTTGTTC 35849 Query 62519 AGATCTTGCGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAAT 62578 | |||| || | | | |||||||| | | || || || ||||| ||| Sbjct 35850 AAATCTCTGGCAGCTTGAGAAGTGAATGGATATCTCATAAGCATGAAACAATCTGCCAAT 35909 Query 62579 CCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATA 62638 ||||| ||||| | || || || | ||| | | |||| || ||| ||||| |||| Sbjct 35910 CCTTGTACACCTAATCCAATTGGACGATGACGCATATTTGAATTTTTGGCTTCAGGAACT 35969 Query 62639 GGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCC 62698 ||||||||||| || || || || || || | ||||| | | | || || Sbjct 35970 GGATAATAATTGATGTCAATGATCTTGTTCAAGTTTCTTGTGAGAGCGCGAGCAACTTCA 36029 Query 62699 TTCAGTTTGAGAAAATCAAATCGCCCATCTA---TTACAAACATGTTCAATGCAACAGAT 62755 ||||||| ||||| || | || ||||||| ||||| |||| ||| Sbjct 36030 GCGAGTTTGACGAAATCGAAAGTCTTTTCAGGGGTTACAAATCGATTCAACGCAATTGAT 36089 Query 62756 GCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGA 62815 |||| ||||||||| || || |||| | | || | || || || |||||||| | | Sbjct 36090 GCCAAATTACAAACCGCAACTTCATCTGGACTCGAAACTTCCATAATTTCAGTGCACAAA 36149 Query 62816 TTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTA 62875 || || || || ||||| | ||||||||||||| | ||| ||| |||||| ||| Sbjct 36150 TTCGAGCATTTAATTGTTCCAATATTTTGTTGATTAGTTTTTCGATTAGCCGCATCTTTA 36209 Query 62876 TAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATA-ATC--GCTTTCCAGACG 62932 || || | || | ||||| ||||| ||| ||| ||| | | ||| ||| | Sbjct 36210 TATGTGATATAAGGCATTCCAGTCTCAATTTGA--TTCGATACAACATGCTC-CCACAAT 36266 Query 62933 ACTCGAGCCTTTATTATAGATTTGTATCTCTTTTC--TCTTTCGTATAGT--GTATACAA 62988 || || || | || ||| | || |||||| |||||| ||| | || || | Sbjct 36267 TTTCTCGCTTTCAC---AGTTTT-TCTCACTTTTCCCTCTTTCTCATATTTGGTGTAAAG 36322 Query 62989 TCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAA 63048 ||||||||| || |||||||| | || ||||| ||||||| || ||||| | Sbjct 36323 AGCTTCGAACTCTTCACCCCAAACTTCATCGAGTCCTTGACATTCGCAAGGGCACATTAG 36382 Query 63049 CGACCACTCTCCGTCATCCTTC-ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTA 63107 |||||| ||| |||| || ||| || |||||||| || | ||| || | ||||||||| | Sbjct 36383 CGACCAATCTTCGTC-TCTTTCGACGCGTTTCATGAACAAATCTGGGACCCAAAGAGCCA 36441 Query 63108 TAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACG 63167 || ||||| | | ||| | ||| || || || || || ||| ||| ||| Sbjct 36442 GGAAAAGATCGCGAGCTCTCTCTTCTTCTGGGCCAGTGTTTTTGCGGAGAGCGACGAATT 36501 Query 63168 CCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTC 63227 | | |||||| | |||||| ||||| | || || || | | || || |||||||||| Sbjct 36502 CGAAAATATCGGCATGCCATGGTTCGAGATAAATAGCAAAGGCACCTGGACGTTTGTTTC 36561 Query 63228 CTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCAT 63287 | || ||||| | ||||| || ||||| || ||||| | | |||||||| || ||||| Sbjct 36562 CACCTTGATCGACATATCTGGCTGTGTTGTTGTAAACGCGAAGCATTGGAACAAGACCAT 36621 Query 63288 TGGATGTACCATTGGTC 63304 | ||||| || |||||| Sbjct 36622 TTGATGTTCCGTTGGTC 36638 Score = 221 bits (244), Expect = 2e-52 Identities = 433/635 (68%), Gaps = 10/635 (2%) Strand=Plus/Plus Query 63349 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 63408 ||| ||||| || || |||| ||||| ||||| ||| |||| | ||||| ||||| || Sbjct 36736 ACCGATTCCACCAGCATTTTTCGAGATCAATGCACATTGTTTCAGAGTATCGTAGATTCC 36795 Query 63409 CTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 63468 | || |||||| |||| | || | ||| || |||||||| | |||| ||| Sbjct 36796 CAAGATCGAATCATCGCTCATTGTTAGCAAAAAGCAAGATGACATTTGTGGCCGACGAGT 36855 Query 63469 TCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTA 63528 ||||| || || || || || ||||| || || | || | || || | |||||||| Sbjct 36856 TCCCGAGTTGAACAATGTTGGCGAAGCATGTGTCATATATCTCTCCGACATGAGATTGTA 36915 Query 63529 CGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACAT 63588 || || || |||| || | ||| | |||||||| || | || | ||| ||||| Sbjct 36916 GGTTTCGATGGCTGCATCAACATCGTCTCCGTGAATTCCAACAGAAACTCTCATCAACAT 36975 Query 63589 GTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGT 63648 || || || | ||| ||||| | | | |||||||| | || ||| |||||| ||| Sbjct 36976 TTGTTGTGGGCGTTCGACGATTTGATCATCGATTTTCAAAAGATACGATCTTTCCAGAGT 37035 Query 63649 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTT 63708 ||| |||||||| || ||||||| | || || ||||||| || | ||||| ||||| Sbjct 37036 TTTGAAACCAAAGAAGGTGTATGAGTAATCGCGATCGTAAACGATGGCTGAGTTAAGTTT 37095 Query 63709 ATCCTTATATTTGTTAACTACATCCATGGTAA--TACTTGA--AATAATAGGAAAATGTT 63764 ||| || ||| ||| | || |||| | ||||| ||| || ||| |||||| Sbjct 37096 ATCTGCATTTTTCATAATTGTATT----GTAAGTTTCTTGACTAATCATTGGAGAATGTT 37151 Query 63765 TCCCATTTTTAGGATTGACATAGTT-GAATAAATCCTCCATCACTTCACTAAATAGtttt 63823 || | ||||| || | || | | ||| | |||||||||| || | ||| Sbjct 37152 GTCCGGTCAAAGGAT-GATGGAATTCGTACAAAGTTTTCATCACTTCAGAGAAAACTTTG 37210 Query 63824 tttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGA 63883 ||||||| ||||| | || || || || ||||| || || |||| ||||| || ||| Sbjct 37211 TTTGTTTTCTTGTGCAAGTTAGAAACAGCAATTCTTGCAGCAAGAAGAGCATATTCTGGA 37270 Query 63884 TGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTT 63943 ||||| || || | || || |||| || || ||| | |||||||| || |||||| Sbjct 37271 TGTTGAGTTGTCATTGAAGCGGCGGTTTCAGCGGCAAGATTATCCAATTCAACAGTTGTT 37330 Query 63944 ACACCATTATATATTCCTTGGATAACCTTCATAGC 63978 ||||| || || | ||| ||| || || || || Sbjct 37331 ACACCTTTGTACAATCCACTGATGACTTTGATGGC 37365 Score = 147 bits (162), Expect = 3e-30 Identities = 298/439 (68%), Gaps = 9/439 (2%) Strand=Plus/Plus Query 61871 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 61930 || ||||| || | | ||| |||||||| || || | || |||| || || ||| Sbjct 35147 GCTGGTTTTGTTCTCAAATAATACATTCCAGTCTTCAATCCCTTCTTCCAACCATAGAAA 35206 Query 61931 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 61990 ||||| || | || |||||| || | || ||||| ||||||| | ||| | Sbjct 35207 TGCATTGATGTGATCGCGGCATAACTTGGTTTAGCCATATGAATATTCAAACTTTGTGAT 35266 Query 61991 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCTTTTGTGGAATTTCC 62050 ||||| ||||| ||||| | ||||||||||| | |||||| ||||| | |||||| Sbjct 35267 TGATCAATGAAAGCTCCGCGATCTGCAGCCATCTCAATAATCTCTTTTTGCGATATTTCC 35326 Query 62051 CAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGTTTG-----TATTCTGAATG 62104 |||| ||||| || ||||| || || || ||||| |||| |||| ||||| Sbjct 35327 CAAACTGTTTTGTACAACTC-TTTGATTTCAGTTGGAA--TTTGTTCAATATTTTGAATC 35383 Query 62105 GATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTT 62164 |||||| || || | | ||| || || ||||||| ||||||| || Sbjct 35384 GATCCATTGCTGGCAATCAATCGATTTTTCATATCATCATCCCATAATCCAAGTTCAACC 35443 Query 62165 AAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTG 62224 ||| | | | | ||| ||||| || | ||| || || |||||||| || | |||| Sbjct 35444 AAATCCTTCAACAAATGTGGATTGACAATTTGGAAATCGCCAGACAAAACACGTCGAGAA 35503 Query 62225 TAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGAT 62284 || ||||| || || ||||| | |||||||| ||||| | |||||||| || || Sbjct 35504 TAGATATTGGAAGTGTATGGTTCAATTGACTCATTGTTTCCGAGGATTTGAGCTGTGGAA 35563 Query 62285 GCAGTCGGCATAGGTGCCA 62303 ||||| ||||| || |||| Sbjct 35564 GCAGTTGGCATTGGAGCCA 35582 >seq32583 Length=15821 Score = 161 bits (178), Expect = 1e-34 Identities = 363/541 (67%), Gaps = 21/541 (4%) Strand=Plus/Plus Query 32475 CCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAA 32534 ||||||||| | ||| ||| || |||||||| |||||| | ||| | | |||| Sbjct 6669 CCCAATTCAACCAACAAATGATCAGCAACAAATTCGATATATTGTGACATAAGTCGACAA 6728 Query 32535 TTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACC 32594 ||||| || || | | ||| || | |||| |||| | ||||||||||| || ||||| Sbjct 6729 TTCATACCAATCATATCAACAGGCAAAGCCTCAGTCAAGAATTCTTGTTCGATTGAGACG 6788 Query 32595 GCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAAC 32654 || ||| | ||||| || || | ||| | || ||| | |||| || || || | Sbjct 6789 GCATCTTTGATAATT--TCATA--GATTCGTT-CT---TGGCT-CAATTTATTTTGAAGC 6839 Query 32655 ATCAAA---------CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCG 32705 ||| || || |||||||| | ||| || || |||||||| ||| | || Sbjct 6840 ATCGAATACAAAAGACAAGCGAAATCACGGTGAAGTCCTTCGTCTCTTGAAATGAGCTCA 6899 Query 32706 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAAT 32765 || ||| || | ||| ||||| | || | |||||| | ||| || || || |||||| Sbjct 6900 TTTGAATGAGTCAATCCTGGCATCAATCCTCTCTTTTTCAACCAGAAAATTGAGGCAAAT 6959 Query 32766 GATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCG 32825 || || || ||||| |||||||| || || ||||| ||||| | ||| || || | Sbjct 6960 GAGCCGGAGAAGAATATTCCTTCGACAGCAGCAAATGCAATTAATCTTTCAGCAAATGAT 7019 Query 32826 GCGCTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATT 32882 || | | || ||||| || |||||||| ||||||||||| | | | | Sbjct 7020 GCATTTTTATCAGAAATCCATTTCAAGGCCCAATCAGCCTTCTTTTTGATGAATTCGAAT 7079 Query 32883 GTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATC 32942 || ||||| || || | | | |||| | ||| || ||| || |||||| Sbjct 7080 TCGAAAATTGCATTGAAAAGTGAATGTCTTTCTTGTTCATCGCGAATATAAGTTTCAATC 7139 Query 32943 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCAT 33002 || ||||||||| ||||||||||||||||| || ||||| ||||| || ||| || Sbjct 7140 AATTTTGAATACATTTCTGAATGAATGTTTTCAATTGCAATTTGGAATCCATAAAAGAAT 7199 Query 33003 C 33003 | Sbjct 7200 C 7200 Score = 102 bits (112), Expect = 1e-16 Identities = 108/142 (76%), Gaps = 3/142 (2%) Strand=Plus/Plus Query 32311 TTCTTTAAAAGTCAACATCTAGAGAAAAATGATTGTC---TTCTTGAGACATAACTCCCA 32367 || |||| |||||| | || ||| ||| ||| || ||||| | |||||| || Sbjct 6427 TTGTTTAGAAGTCAGCTTCGAGATCAAATTGACGTTCAGATTCTTTTGTCATAACACCAG 6486 Query 32368 TTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATAT 32427 | |||| ||||| |||||||| ||||| ||||| ||||| || || | |||||||| Sbjct 6487 GTCTTTGATATTCGGAAACACGTTTCTCGAAGAAATTTGTTTTTCCGTCGATTGATATAT 6546 Query 32428 TTTCCATGAAATCGAATGGATT 32449 |||||||||||||||||||||| Sbjct 6547 TTTCCATGAAATCGAATGGATT 6568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633366199296400