Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq13386 158 1e-33 seq16010 131 1e-25 >seq13386 Length=19191 Score = 158 bits (174), Expect = 1e-33 Identities = 176/233 (76%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || || ||||| || ||| |||||||| | ||||| || | || Sbjct 13746 ATGCAAATCTTTGTCAAAACATTGACTGGAAAAACCATCACATTGGAAGTTGAAGCTTCG 13687 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || || |||| ||||||||| ||| || |||||||| |||||||| || Sbjct 13686 GACACAATTGAAAATGTCA---AAGCAAAAATTCAA-GATAAAGAAGGAATTCCACCAGA 13631 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 |||||| | | ||||||||||| |||||||| ||||||| | ||| | ||| || Sbjct 13630 CCAACAAAGATTGATTTTTGCCGGAAAACAATTGGAAGATGGAAGAACTCTCTCCGACTA 13571 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||| || |||||||| ||||| || || || || || | || |||||||||| Sbjct 13570 CAACATCCAAAAAGAGTCCACCCTCCACTTGGTCCTTCGTCTCAGAGGAGGAA 13518 Score = 149 bits (164), Expect = 5e-31 Identities = 174/233 (75%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || ||||||||||| || ||||||| | ||||| ||| | ||| Sbjct 12425 ATGCAAATCTTTGTCAAAACTTTGACCGGAAAGACCATCACCCTTGAAGTTGAGGCTTCT 12366 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || || ||||| |||| |||| |||| ||| ||||||||||| || ||||| || Sbjct 12365 GATACCATCGAAAATGTCA---AAGCTAAAATTCAA-GACAAAGAAGGAATCCCACCAGA 12310 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 |||||| | | || || ||||| |||||||| ||||| | | || | ||| || Sbjct 12309 CCAACAAAGATTGATCTTCGCCGGAAAACAATTGGAAGACGGAAGAACCCTCTCCGACTA 12250 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||| |||||||||||||| || || || || || || | || |||||||||| Sbjct 12249 CAACATTCAAAAAGAATCAACACTCCACTTGGTTCTTCGTCTCAGAGGAGGAA 12197 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| || |||||||| || ||| ||||||| | ||||| || | || Sbjct 14203 AATGCAAATCTTTGTCAAAACTTTGACTGGAAAAACCATCACTTTGGAAGTCGAAGCTTC 14144 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||| || || ||| | ||| || ||| ||||| ||||| |||||||| ||||| Sbjct 14143 TGATACCATTGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATTCCACCAGACCA 14084 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| | | || || ||||| |||||||| ||||||| | || | ||| ||||| Sbjct 14083 ACAAAGATTGATCTTCGCCGGAAAACAATTGGAAGATGGAAGAACCCTCTCCGACTACAA 14024 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || ||||||||||| || || || || || | || | |||||||||| Sbjct 14023 CATCCAAAAAGAATCAACACTTCACTTGGTTTTGAGATTGAGAGGAGGAA 13974 Score = 129 bits (142), Expect = 5e-25 Identities = 160/217 (74%), Gaps = 8/217 (4%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || ||||| | || || ||| | |||||| | ||||| || | || Sbjct 13975 AATGCAAATCTTCGTCAAGACACTCACTGGAAAAACAATCACACTTGAAGTTGAAGCTTC 13916 Query 25058 TGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 |||||| ||||| |||| |||| || | || ||||| ||||| || ||||| | Sbjct 13915 TGACACCATCGAAAATGTCA---AAGCTAAGATCCAA-GACAAGGAAGGAATCCCACCAG 13860 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 | ||||| || | ||||||||||| |||||||| ||||||| ||||| || |||| Sbjct 13859 ATCAACAACGTCTCATTTTTGCCGGAAAACAATTGGAAGATGGACGCACATTGTCTGATT 13800 Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||| || ||||| ||||| || || || || || || Sbjct 13799 ACAACATCCAAAAGGAATCTACCCTTCACTTGGTTCT 13763 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| | ||||| ||| | ||||| | ||||| || | ||| Sbjct 13237 ATGCAAATTTTCGTCAAGACCCTCACCGGCAAAACTATCACCTTGGAAGTCGAAGCTTCT 13178 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| || ||| ||||||||||| |||||||| |||||| Sbjct 13177 GACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAAGAAGGAATTCCACCAGACCAA 13118 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || | | || || ||||| |||||||| ||||||| | || | ||||| ||| Sbjct 13117 CAAAGATTGATCTTCGCCGGAAAACAATTGGAAGATGGCAGAACCCTTTCGGATTATAAT 13058 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 |||||||| ||||| || || || || || | || | |||||||||| Sbjct 13057 ATTCAAAAGGAATCAACACTCCACTTGGTTTTGAGATTGAGAGGAGGAA 13009 Score = 84.2 bits (92), Expect = 2e-11 Identities = 96/127 (76%), Gaps = 8/127 (6%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || || ||||||||||| ||| ||||||| | ||||| || | || Sbjct 13519 AATGCAAATCTTCGTCAAAACTTTGACCGGAAAAACCATCACTTTGGAAGTCGAAGCTTC 13460 Query 25058 TGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 |||||| ||||| |||| |||| || ||| ||||| ||||| || ||||| | Sbjct 13459 TGACACCATCGAAAATGTCA---AAGC-CAAGATCCAAGACAAGGAAGGAATCCCACCAG 13404 Query 25114 ACCAACA 25120 ||||||| Sbjct 13403 ACCAACA 13397 >seq16010 Length=816 Score = 131 bits (144), Expect = 1e-25 Identities = 170/233 (73%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| | || || || ||||| || ||| | |||||| ||||||| || | || Sbjct 364 ATGCAAATCGTCGTCAAAACATTGACTGGAAAAACTATCACACTCGAAGTCGAAGCTTCC 305 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || || |||| ||||||||| ||| || || ||||| || ||||| | Sbjct 304 GACACAATTGAAAATGTCA---AAGCAAAAATTCAA-GATAACGAAGGAATCCCACCACA 249 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||| | | ||||||||||| |||||||| ||||||| | ||| | ||||| Sbjct 248 TCAACAAAGATTGATTTTTGCCGGAAAACAATTGGAAGATGGAAGAACTCTTTCTGATTA 189 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||| || ||||| ||||| || || ||||| || || | || |||||||||| Sbjct 188 CAACATCCAAAAGGAATCAACACTCCATTTGGTTCTTCGTCTCAGAGGAGGAA 136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433150768712585