Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq32583 82.4 8e-11 >seq32583 Length=15821 Score = 82.4 bits (90), Expect = 8e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGT 93541 ||||||||||| || ||||| || || || ||||| ||||| | | | | ||| | Sbjct 7400 TTTTCATTGACAATTCCATCAGAAGCAGCGAAAAATGCCAAAACACGAGAAACAAAGAAT 7459 Query 93542 TTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCG 93601 | ||||| | || | || |||||||| | ||||||| | ||| |||||||| Sbjct 7460 TGTTCATCTCCGTTCATTTTTTCCCAATCTTTCATATCTTTTCCCAAATCAACTTCTTCA 7519 Query 93602 ACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATT 93661 |||||||| || ||||| | || || ||||| | ||||| || |||| || | | Sbjct 7520 ACAGTCCAGAATGATGCAACAGCCTTCTTGTAAAACTCCCAAATTGTATGATGTTTGAGT 7579 Query 93662 GGAAATATGACAAAACGATT 93681 || || || || || ||||| Sbjct 7580 GGGAAAATAACGAATCGATT 7599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556627203855160