Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq33494 100 6e-16 seq32875 100 6e-16 seq32691 100 6e-16 seq31336 100 6e-16 seq30516 100 6e-16 seq28521 100 6e-16 seq23863 100 6e-16 seq16373 100 6e-16 seq9667 100 6e-16 seq32721 98.7 2e-15 seq31049 98.7 2e-15 seq9771 98.7 2e-15 seq31033 95.1 2e-14 >seq33494 Length=48022 Score = 100 bits (110), Expect = 6e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| | |||| |||||||||| Sbjct 4213 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 4272 Query 142564 CCCACATCGGGCAGA 142578 ||| |||||||| || Sbjct 4273 CCCGCATCGGGCTGA 4287 >seq32875 Length=5833 Score = 100 bits (110), Expect = 6e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| | |||| |||||||||| Sbjct 818 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 759 Query 142564 CCCACATCGGGCAGA 142578 ||| |||||||| || Sbjct 758 CCCGCATCGGGCTGA 744 >seq32691 Length=20431 Score = 100 bits (110), Expect = 6e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| | |||| |||||||||| Sbjct 8126 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 8067 Query 142564 CCCACATCGGGCAGA 142578 ||| |||||||| || Sbjct 8066 CCCGCATCGGGCTGA 8052 >seq31336 Length=4079 Score = 100 bits (110), Expect = 6e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| | |||| |||||||||| Sbjct 2353 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 2294 Query 142564 CCCACATCGGGCAGA 142578 ||| |||||||| || Sbjct 2293 CCCGCATCGGGCTGA 2279 >seq30516 Length=5495 Score = 100 bits (110), Expect = 6e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| | |||| |||||||||| Sbjct 3881 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 3822 Query 142564 CCCACATCGGGCAGA 142578 ||| |||||||| || Sbjct 3821 CCCGCATCGGGCTGA 3807 >seq28521 Length=1445 Score = 100 bits (110), Expect = 6e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| | |||| |||||||||| Sbjct 648 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 707 Query 142564 CCCACATCGGGCAGA 142578 ||| |||||||| || Sbjct 708 CCCGCATCGGGCTGA 722 >seq23863 Length=672 Score = 100 bits (110), Expect = 6e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| | |||| |||||||||| Sbjct 364 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 305 Query 142564 CCCACATCGGGCAGA 142578 ||| |||||||| || Sbjct 304 CCCGCATCGGGCTGA 290 >seq16373 Length=1410 Score = 100 bits (110), Expect = 6e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| | |||| |||||||||| Sbjct 538 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 597 Query 142564 CCCACATCGGGCAGA 142578 ||| |||||||| || Sbjct 598 CCCGCATCGGGCTGA 612 >seq9667 Length=2916 Score = 100 bits (110), Expect = 6e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| | |||| |||||||||| Sbjct 1687 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 1746 Query 142564 CCCACATCGGGCAGA 142578 ||| |||||||| || Sbjct 1747 CCCGCATCGGGCTGA 1761 >seq32721 Length=51901 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| | |||| |||||||||| Sbjct 23712 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 23771 Query 142564 CCCACATCGGGC 142575 ||| |||||||| Sbjct 23772 CCCGCATCGGGC 23783 >seq31049 Length=5602 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| | |||| |||||||||| Sbjct 2778 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 2837 Query 142564 CCCACATCGGGC 142575 ||| |||||||| Sbjct 2838 CCCGCATCGGGC 2849 >seq9771 Length=1277 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| | |||| |||||||||| Sbjct 641 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 700 Query 142564 CCCACATCGGGC 142575 ||| |||||||| Sbjct 701 CCCGCATCGGGC 712 >seq31033 Length=11890 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| | |||| |||||||||| Sbjct 9694 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 9753 Query 142564 CCCACATCGGGC 142575 || |||||||| Sbjct 9754 CCTGCATCGGGC 9765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027394856193119