Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq13386 138 1e-27 >seq13386 Length=19191 Score = 138 bits (152), Expect = 1e-27 Identities = 176/242 (73%), Gaps = 4/242 (2%) Strand=Plus/Plus Query 114145 ATTTACAAAT----ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGA 114200 |||||||| | ||| ||||| || | | ||| ||||| | || ||||| ||||| Sbjct 11956 ATTTACAAGTTTGAACCACCACGAAGGCGAAGAACCAAATGAAGAGTCGATTCCTTTTGG 12015 Query 114201 ATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGC 114260 |||||||| ||| | ||| ||| |||||| | |||||| || ||| |||||||||| Sbjct 12016 ATGTTGTAGTCGGAGAGAGTGCGACCATCTTCCAATTGTTTTCCGGCGAAGATGAGACGT 12075 Query 114261 TGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTG 114320 ||||| || || || || ||||| ||||| ||||| || | | ||| | |||| Sbjct 12076 TGTTGATCTGGTGGGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTTTCGATGGTG 12135 Query 114321 TCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGC 114380 || | || |||||| |||| ||| | ||||||||||| || || || || ||||| ||| Sbjct 12136 TCAGAGGCTTCGACTTCCAAGGTGATGGTTTTGCCGGTGAGGGTCTTGACGAAAATTTGC 12195 Query 114381 AT 114382 || Sbjct 12196 AT 12197 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 114167 TCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGA 114226 ||||||||| || || | || ||||| |||||||| || ||||| | || | Sbjct 13022 TCTCAAAACCAAGTGGAGTGTTGATTCCTTTTGAATATTATAATCCGAAAGGGTTCTGCC 13081 Query 114227 ATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTT 114286 |||||| | |||||| || ||| |||| | | |||||||| || ||||| |||||||| Sbjct 13082 ATCTTCCAATTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGTGGAATTCCTTCTTT 13141 Query 114287 GTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCAC 114346 ||| ||||| || | | ||||| |||||| | | |||||| |||| ||| | Sbjct 13142 GTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCAGAAGCTTCGACTTCCAAGGTGAT 13201 Query 114347 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||||||||||| || || || || ||||| ||||| Sbjct 13202 AGTTTTGCCGGTGAGGGTCTTGACGAAAATTTGCAT 13237 Score = 105 bits (116), Expect = 6e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 114167 TCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGA 114226 ||||||||| || || | || ||||||||||| |||||||| ||| | || | Sbjct 13987 TCTCAAAACCAAGTGAAGTGTTGATTCTTTTTGGATGTTGTAGTCGGAGAGGGTTCTTCC 14046 Query 114227 ATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTT 114286 |||||| | |||||| || ||| |||| | | |||||||| || ||||| ||||| || Sbjct 14047 ATCTTCCAATTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGTGGAATTCCTTCCTT 14106 Query 114287 GTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCAC 114346 ||| ||||| || | | |||| ||| || | | |||||| |||| || | Sbjct 14107 GTCTTGGATCTTGGCCTTGACGTTCTCAATGGTATCAGAAGCTTCGACTTCCAAAGTGAT 14166 Query 114347 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||||| || |||| |||||| ||||| || ||||| Sbjct 14167 GGTTTTTCCAGTCAAAGTTTTGACAAAGATTTGCAT 14202 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | ||| || || | |||||||| ||||| ||||||||||| Sbjct 13745 ATACCACCACGAAGACGGAGAACCAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAATCA 13804 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || |||||| | |||||| || || | |||||||| ||||| || || Sbjct 13805 GACAATGTGCGTCCATCTTCCAATTGTTTTCCGGCAAAAATGAGACGTTGTTGATCTGGT 13864 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||| ||||| ||||| ||| | | ||| | |||||| | | ||| Sbjct 13865 GGGATTCCTTCCTTGTCTTGGATCTTAGCTTTGACATTTTCGATGGTGTCAGAAGCTTCA 13924 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | ||||| || || || || || || || || ||||| Sbjct 13925 ACTTCAAGTGTGATTGTTTTTCCAGTGAGTGTCTTGACGAAGATTTGCAT 13974 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 114242 ACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTG 114301 ||| ||| |||||||||| |||||||| || ||||| ||||||||||| |||||| Sbjct 14409 ACCTGCGAAGATGAGACGTTGTTGGTCTGGTGGAATTCCTTCTTTGTCTTGAATCTTGGC 14468 Query 114302 TTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAG 114361 ||| | | ||| | ||| || | | |||||| || | || | || || ||||| || Sbjct 14469 TTTCACATTTTCGATGGTATCAGAAGCTTCGACTTCAAGTGTGATGGTCTTTCCGGTAAG 14528 Query 114362 AGTTTTTACAAAAATCTGCATG 114383 ||||| |||||||| |||||| Sbjct 14529 TGTTTTGACAAAAATTTGCATG 14550 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 ||| || || | || |||||||||||||||||||| ||| | || | ||||| Sbjct 12216 AACCAAGTGGAGTGTTGATTCTTTTTGAATGTTGTAGTCGGAGAGGGTTCTTCCGTCTTC 12275 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292 | |||||| || ||| |||| | | |||||||| || || || ||||||||||| Sbjct 12276 CAATTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGTGGGATTCCTTCTTTGTCTTG 12335 Query 114293 AATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352 ||| || ||| | | ||| | ||| || | | || || || | ||| | || || Sbjct 12336 AATTTTAGCTTTGACATTTTCGATGGTATCAGAAGCCTCAACTTCAAGGGTGATGGTCTT 12395 Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||||||| |||||| ||||| || ||||| Sbjct 12396 TCCGGTCAAAGTTTTGACAAAGATTTGCAT 12425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419962564899108