Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_009816.1 Length=70579 Score E Sequences producing significant alignments: (Bits) Value seq19961 262 2e-65 seq17624 197 6e-46 seq18015 93.3 2e-14 >seq19961 Length=5435 Score = 262 bits (290), Expect = 2e-65 Identities = 670/1001 (67%), Gaps = 28/1001 (3%) Strand=Plus/Minus Query 59910 TCATCGAACATAAGGTAAGGATAGCCAGACTCAAACTGAACCTCTGCGATGGTCTGGAAC 59969 || ||||| | | ||| || ||||| ||||| ||||| | || |||||||||||||| Sbjct 2851 TCTTCGAAGACGATGTAGGGGTAGCCCGACTCGAACTGCAGTTCGGCGATGGTCTGGAAG 2792 Query 59970 AGCTTTCGAGCGTCGATAAAGGTCTTAGCGATCCTATCATCTTTTAGCCACGTGTCGTAC 60029 | || || |||| ||| ||||| ||| | || | | | | | |||| Sbjct 2791 AACTGGCGCGCGTTGATCTTCGTCTTCTTGATGCGCGGGTCGTCGACCATCTCGCGGTAC 2732 Query 60030 ATCTCGGTTACGGAGAACTCGGACAGTGACTTTCCGTACACCTTATTGATGTCATAAGGA 60089 ||||||| || |||| ||| | | | ||||| || | || ||| || || Sbjct 2731 TTCTCGGTGACCGAGATGTCGCCGAAGGGCACGCCGTAGACGCGCTCGACGTCGTAGGGC 2672 Query 60090 GAGAATAGGGCCATAGGCTCGCTCTCCTTGGCAAGGCGGAACGTGACATCAGGAACGATA 60149 ||||| ||| ||| ||||| || ||| || || ||| |||| || || |||| Sbjct 2671 GAGAAGAGGTACATGTCCTCGCCCTTCTTCGCCAGTTCGAAGGTGATGTCGGGCACGACG 2612 Query 60150 ACTCCTAGGGAGAGAGTCTTAATACGGATCTTCTCGTCGGCGTTTTCACGCTTGGTATCC 60209 || || || ||||| ||||| || |||||||||||||| ||||| || |||||||| || Sbjct 2611 ACGCCGAGCGAGAGCGTCTTGATGCGGATCTTCTCGTCCGCGTTCTCGCGCTTGGTGTCG 2552 Query 60210 AGGAACGCAAGGATGTCGGGGTGGTGTGCGTTCAAATATACCGCCCCTGCGCCCTGCCTT 60269 |||||| | ||||||||||||||| ||||| | || ||||| || |||||||| | | Sbjct 2551 AGGAACTTCATGATGTCGGGGTGGTGCGCGTTGAGGTACACCGCGCCCGCGCCCTGGCGT 2492 Query 60270 GCACCCAGTTGGTTAGAGTAGGAGAAGCTATCTTCTAGAATCTTCATCACAGGGATGACT 60329 || || || ||||| | |||| |||||| ||||| || | ||||||||| ||||||| Sbjct 2491 GCGCCGAGCTGGTTGGCGTAGCTGAAGCTGTCTTCGAGCAGCTTCATCACGGGGATGATG 2432 Query 60330 CCAGAGGCCTGACCTTCTCGACC--CTTAATCGGAGCTCCTGCCTCGCGGAGGTTGGAGA 60387 || |||| ||| ||||||| | ||| ||||| || || |||||||||| ||||||| Sbjct 2431 CCCGAGGACTG--GTTCTCGATCTTCTTGATCGGGGCGCCCGCCTCGCGGATGTTGGAG- 2375 Query 60388 ATCCAATGC-CGACTCCGCCACCACGCTTAGACAGCTGGAGAGA-GTCCTGA-ACGATTC 60444 | | | || | || ||||| || ||||| || ||||| || || | ||| || | Sbjct 2374 AGCGAGAGCGCCACGCCGCCGCCGCGCTTCGAGAGCTGCAGCGACGAGTTGATACCGCGC 2315 Query 60445 GACCGATGGACCCCATGGTGTCCTGAACATCGAGGATGAAGCATGATACTGGCTTGCCTG 60504 || ||| || ||||| |||||| | || | |||||| || || ||| ||| | Sbjct 2314 GA--GATCGATTCCATGTTGTCCTCGATGCGCAGCAGGAAGCACGAGACGAGCTCGCC-G 2258 Query 60505 CGTCGAGAAGCCCCG-CGTTGAGGAAGGTCGGAGTTGCAGGCTGGAAGATTCCCTTGATA 60563 || | | ||| |||||||||||| || || || ||||||||| ||| || Sbjct 2257 CGCTGCGCCTTGCCGAGGTTGAGGAAGGTGGGGGTGGCCGGCTGGAAGCGGCCCGAGACG 2198 Query 60564 AT---GAGATCCACA-AGGGACTCAGCGTGCTCGAAGTCTT---CGCTGTAGTGGATGGC 60616 || | | ||| | | | |||| | |||| | | | || | || | | Sbjct 2197 ATCTCGCGGACCAGACCGCGCGCCAGC-TCCTCGTCGCCCTGAGCGAGCCCGAGGGCGAC 2139 Query 60617 CGTGAGTACCACTCGATCTTCGTAGCGCTCGTAATAGCGCTTGCCATCGTTAGTCTTCAA 60676 | || || || ||||| ||| |||| ||| || |||||||| ||| ||||| | Sbjct 2138 CATG---ACGACGCGATCCTCGAAGCGTTCGAGGTACCGCTTGCCGTCGAACGTCTTGAG 2082 Query 60677 GGCGTAGGAGTTATAGAACTTCAGCGCTCCCATGTAGGTCTTGAAGCGGAACTTGTGTCC 60736 ||||| ||| | ||||||| | || || | | | ||| |||||||||||| | Sbjct 2081 CGCGTACGAGGTGAAGAACTTGAAGGCGCCGAGGAACGTCGGGAAGCGGAACTTCATCGC 2022 Query 60737 GTAGGCCTGTTTCATGAGTCTCTTTAGGTCCTCGAAGCCGTAGCGAAGGACGACATCCTT 60796 ||| |||| | | || | || | | || || ||| | || || |||| Sbjct 2021 GTACGCCTCGTCGGTCAGCCGCTCGACGAACTTGACCGAGTACTGCTCGAAGAGGTCCT- 1963 Query 60797 GTCCCATAGTTGGACTTCCTCTGTGAGGTGATCCACCTTCTCCTCTAGGGAGTGAAAGAA 60856 || | ||| | | | | || |||||| ||| ||| || | | ||| ||||| Sbjct 1962 -TCTCGTAG-TAGTCGTTGTCGATGAGGTACCGCACACGCTCTTCGAAGTTGTGGAAGAA 1905 Query 60857 TACGGTGTTCTTGTTGACGTGCTCCAGGAAGTA--GGCGCG 60895 || |||||| ||||||||||| ||||||||| |||||| Sbjct 1904 GACCATGTTCTGGTTGACGTGCTGCAGGAAGTACTGGCGCG 1864 Score = 122 bits (134), Expect = 4e-23 Identities = 224/327 (69%), Gaps = 6/327 (2%) Strand=Plus/Minus Query 58488 GCGTAGATCTGCGCTCGGTTAATGTCTCGCGTTGTCGCTGTATCTGGGAAGAACAGCGTG 58547 |||||||||||||| ||| ||||| || || ||||| || || ||||||||||||| Sbjct 3790 GCGTAGATCTGCGCCTTGTTGATGTCGCGGGTGGTCGCGGTGTCCTTGAAGAACAGCGTG 3731 Query 58548 AGAGACATGCCCTGGTCTACCCAAGGAGATGCTACAGCGTACATATCAATGATCGGGTTA 58607 || |||| ||||||||| || | | || | ||||| | || |||||| | Sbjct 3730 AGCGACAGGCCCTGGTCGACGTGCTGCGTCGCCGCGGCGTAGGTGTCGATGATCTTCTCG 3671 Query 58608 GGTCCGATAGCGTAAGCGCTATCAATTGATTCTACATTCTCATTGGTCACTCCGTACTGA 58667 || ||||| |||| ||| || | | | ||||| || |||| | || | Sbjct 3670 GGGCCGATCTCGTAGGCGTCCTCGTAGTAGGCGAGGTTCTCGTTCGTCAT---GAACGGG 3614 Query 58668 G---GGTAATAGACTCGACCAAGCTTACCCTCCTTGCGAACCTCAACAGGAGAGGTCACA 58724 | |||| ||||| || || ||||| || |||||||| | ||| | || | | Sbjct 3613 GCGGGGTAGTAGACGCGGCCCAGCTTGCCTTCCTTGCGGATCTCGATCTTCGAAGCGATC 3554 Query 58725 GGGTGAATCGAGGCCGTGGCATGGTTAATGTACGAGATAGAGCCGGTTGGTGGGATCGCC 58784 ||||| ||||| | || | | ||| ||||||||||| ||||| || || || | ||| Sbjct 3553 GGGTGGATCGACGAGGTCGAGTTGTTGATGTACGAGATCGAGCCCGTGGGCGGCACGGCC 3494 Query 58785 TGGAGGTTCTGGTTGTAAATACCATGC 58811 || |||||||||||||| || || ||| Sbjct 3493 TGCAGGTTCTGGTTGTAGATGCCGTGC 3467 Score = 84.2 bits (92), Expect = 1e-11 Identities = 123/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 58452 CGGATGTAGTACAGAGACTTCAGGCCCTTCTTGTGAGCGTAGATCTGCGCTCGGTTAATG 58511 ||||||||||| || ||| | ||||| |||||||||||||| ||| ||| Sbjct 4030 CGGATGTAGTAGAGGCTCTTGATCCCCTTGCGCCACGCGTAGATCTGCGCCTTGTTGATG 3971 Query 58512 TCTCGCGTTGTCGCTGTATCTGGGAAGAACAGCGTGAGAGACATGCCCTGGTCTACCCAA 58571 || || || ||||| || || |||||||||||||||||||| ||||||||| || Sbjct 3970 TCGCGGGTCGTCGCCGTGTCCTTGAAGAACAGCGTGAGAGACAGGCCCTGGTCGACGTGC 3911 Query 58572 GGAGATGCTACAGCGTACATATCAATGATCGGGTTAGGTCCGATAGCGTAAGCG 58625 | | || | ||||| |||| |||||| | || ||||| |||| ||| Sbjct 3910 TGCGTCGCCGCGGCGTAGGTATCGATGATCTTCTCGGGGCCGATCTCGTAGGCG 3857 >seq17624 Length=2034 Score = 197 bits (218), Expect = 6e-46 Identities = 310/435 (71%), Gaps = 24/435 (6%) Strand=Plus/Plus Query 60128 GAACGTGACATCAGGAACGATAACTCCTAGGGAGAGAGTCTTAATACGGATCTTCTCGTC 60187 |||||| ||||| || | | || || || || || ||||| || ||||||||||| || Sbjct 435 GAACGTCACATCGGGGATCACCACACCGAGCGACAGCGTCTTGATGCGGATCTTCTCATC 494 Query 60188 GGCGTTTTCACGCTTGGTATCCAGGAA-CGCAAGGATGTCGGGGTGGTGTGCGTTCAAAT 60246 ||||| || |||||||| || ||||| ||| | ||||||||||||||| |||| || | Sbjct 495 CGCGTTCTCGCGCTTGGTGTCGAGGAAGCGC-ATGATGTCGGGGTGGTGGGCGTGCAGGT 553 Query 60247 ATACCGCCCCTGCGCCCTGCCTTGCACCCAGTTGGTTAGAGTAGGAGAAGCTATCTTCTA 60306 | ||||| || |||||||| | || ||||| || || | |||| |||||| || || | Sbjct 554 ACACCGCTCCCGCGCCCTGACGCGCGCCCAGCTGATTCGCGTAGCTGAAGCTGTCCTCCA 613 Query 60307 GAATCTTCATCACAGGGATGACTCCAGAGGCCTGACCTTCTCGA--CCCTTAATCGGAGC 60364 | ||||||||||| || | ||| || || | |||| ||||||| | ||| ||||| || Sbjct 614 GGATCTTCATCACCGGCACGACGCCCGATGACTGA--TTCTCGATCCGCTTGATCGGCGC 671 Query 60365 TCCTGCCTCGCGGAGGTTGG--AGAATCCAATGCCGACTCCGCCACCACGCTTAGACAGC 60422 || ||||| || ||||| | || | | | |||||||||| || ||||| || ||| Sbjct 672 ACCCGCCTCACGCAGGTTCGTCAGCAGC--AGCGCGACTCCGCCGCCGCGCTTCGAGAGC 729 Query 60423 TGGAG---AGAGTCCTGAACGATTCGACCGATGGACCCCATGGTGTCCTGAACATCGAGG 60479 || || |||| | || || ||||| ||| | | | |||||| | || Sbjct 730 TGCAGCGCCGAGTTC---ACCCCACGGCCGATCGACTCGAGGTTGTCCTCCAGGCGCAGC 786 Query 60480 ATGAAGCATGATACTGGCTTGC----CTGCGTCGAGAAGCCCCGCGTTGAGGAAGGTCGG 60535 | |||||| || || ||| || |||| | | |||||||| ||||||||||| Sbjct 787 AGGAAGCACGAGACGAGCTCGCCCCGCTGCCGCTTG----CCCGCGTTCAGGAAGGTCGG 842 Query 60536 AGTTGCAGGCTGGAA 60550 || || |||||||| Sbjct 843 CGTCGCCGGCTGGAA 857 >seq18015 Length=1372 Score = 93.3 bits (102), Expect = 2e-14 Identities = 111/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 57378 CCTTCTGGAATTTATATCCCAAGTAATAGCCATGCACACCCTCGTCTCTCATGATAAGGC 57437 |||||||||| || || || | ||| ||||| ||||| ||||||| | ||||| |||| Sbjct 605 CCTTCTGGAACTTGTAGCCGATGTAGTAGCCGTGCACGGCCTCGTCGCGGATGATGAGGC 664 Query 57438 GGATAAGGTCCGCTGTGTTGGTGAGTTTACCTTGAGAGGCGAAGTGAAGAGGGAGATAGA 57497 |||| ||||| || ||||||||||| || | || | ||| | || || |||| Sbjct 665 GGATGAGGTCTGCCGTGTTGGTGAGCTTGGCGTGGCTCGACCAGTACATGGGCAGGTAGA 724 Query 57498 AGCCGGTATAGAACAAGAATGATTCCAGGAG 57528 |||| | ||||||| ||| ||||| || || Sbjct 725 AGCCCGAGTAGAACAGGAACGATTCGAGCAG 755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 225635677177460