Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq13386 163 7e-35 seq30935 138 3e-27 seq16010 123 6e-23 >seq13386 Length=19191 Score = 163 bits (180), Expect = 7e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| || | ||||| || ||| |||||||| || ||||||| | Sbjct 11971 CCACCACGAAGGCGAAGAACCAAATGAAGAGTCGATTCCTTTTGGATGTTGTAGTCGGAG 12030 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || ||||| ||||||||||| |||||||| ||||| |||||| |||| Sbjct 12031 AGAGTGCGACCATCTTCCAATTGTTTTCCGGCGAAGATGAGACGTTGTTGATCTGGTGGG 12090 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| || || ||||| || || || |||||||| || | || | ||| ||| Sbjct 12091 ATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTTTCGATGGTGTCAGAGGCTTCGACT 12150 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || | ||||| || || ||||| || ||||||||||| || |||||| Sbjct 12151 TCCAAGGTGATGGTTTTGCCGGTGAGGGTCTTGACGAAAATTTGCATT 12198 Score = 149 bits (164), Expect = 1e-30 Identities = 148/192 (77%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||| || || ||||||| ||| || | ||||||||| ||||||||||| ||||| Sbjct 12234 TTCTTTTTGAATGTTGTAGTCGGAGAGGGTTCTTCCGTCTTCCAATTGTTTTCCGGCGAA 12293 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||||| | ||||| ||||||||||||||| || || ||||| ||||| || || Sbjct 12294 GATCAATCTTTGTTGGTCTGGTGGGATTCCTTCTTTGTCTTGAATTTTAGCTTTGACATT 12353 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| || | ||| | || ||||| || ||||| ||||| ||||||| ||| ||||| Sbjct 12354 TTCGATGGTATCAGAAGCCTCAACTTCAAGGGTGATGGTCTTTCCGGTCAAAGTTTTGAC 12413 Query 288462 GAATATCTGCAT 288473 || || ||||| Sbjct 12414 AAAGATTTGCAT 12425 Score = 132 bits (146), Expect = 1e-25 Identities = 145/193 (75%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| |||||||| || || || | | |||||||| ||||| ||||||||||| || || Sbjct 13783 TTCCTTTTGGATGTTGTAATCAGACAATGTGCGTCCATCTTCCAATTGTTTTCCGGCAAA 13842 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || ||||| |||||| |||||||||||| || || ||||| || ||||| || || Sbjct 13843 AATGAGACGTTGTTGATCTGGTGGGATTCCTTCCTTGTCTTGGATCTTAGCTTTGACATT 13902 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| || | || | ||| ||||| || ||||| || || || || || |||||||| Sbjct 13903 TTCGATGGTGTCAGAAGCTTCAACTTCAAGTGTGATTGTTTTTCCAGTGAGTGTCTTGAC 13962 Query 288462 GAATATCTGCATT 288474 ||| || |||||| Sbjct 13963 GAAGATTTGCATT 13975 Score = 127 bits (140), Expect = 5e-24 Identities = 144/193 (75%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||||||||| || ||||||| ||| || | ||| ||||| ||||||||||| ||||| Sbjct 14011 TTCTTTTTGGATGTTGTAGTCGGAGAGGGTTCTTCCATCTTCCAATTGTTTTCCGGCGAA 14070 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||||| | ||||| ||| |||||||| || || ||||| || || || ||||| Sbjct 14071 GATCAATCTTTGTTGGTCTGGTGGAATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTT 14130 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | ||| | ||| ||||| | ||||| || || || |||| ||| ||||| Sbjct 14131 CTCAATGGTATCAGAAGCTTCGACTTCCAAAGTGATGGTTTTTCCAGTCAAAGTTTTGAC 14190 Query 288462 GAATATCTGCATT 288474 || || |||||| Sbjct 14191 AAAGATTTGCATT 14203 Score = 120 bits (132), Expect = 7e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||||||||| || ||||||| ||| || | ||| ||||| ||||||||||| || || Sbjct 13556 TCTTTTTGGATGTTGTAGTCGGAGAGAGTTCTTCCATCTTCCAATTGTTTTCCGGCAAAA 13615 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| | ||||| ||| |||||||||||||| || ||||| ||||| || ||| Sbjct 13616 ATCAATCTTTGTTGGTCTGGTGGAATTCCTTCTTTATCTTGAATTTTTGCTTTGACATTT 13675 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || | ||| ||||| | ||||| || || || |||| || ||||| Sbjct 13676 TCAATTGTGTCCGAAGCTTCAACTTCCAATGTGATGGTTTTTCCAGTCAATGTTTTGACA 13735 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 13736 AAGATTTGCAT 13746 Score = 116 bits (128), Expect = 9e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| ||||| |||||||| || | || || | || ||||| ||||||||||| ||||| Sbjct 13046 TTCCTTTTGAATATTATAATCCGAAAGGGTTCTGCCATCTTCCAATTGTTTTCCGGCGAA 13105 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||||| | ||||| ||| ||||||||||| || ||||| || || || || || Sbjct 13106 GATCAATCTTTGTTGGTCTGGTGGAATTCCTTCTTTGTCTTGGATCTTGGCCTTGACATT 13165 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| || | || | ||| ||||| | ||||| || || ||||| || |||||||| Sbjct 13166 TTCAATGGTGTCAGAAGCTTCGACTTCCAAGGTGATAGTTTTGCCGGTGAGGGTCTTGAC 13225 Query 288462 GAATATCTGCAT 288473 ||| || ||||| Sbjct 13226 GAAAATTTGCAT 13237 Score = 100 bits (110), Expect = 7e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 ||||||||||| ||||| ||||| ||| ||||||||||| || || || || ||| Sbjct 14410 CCTGCGAAGATGAGACGTTGTTGGTCTGGTGGAATTCCTTCTTTGTCTTGAATCTTGGCT 14469 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 ||||| ||||| || | ||| | ||| ||||| || ||||| ||||| ||||| || Sbjct 14470 TTCACATTTTCGATGGTATCAGAAGCTTCGACTTCAAGTGTGATGGTCTTTCCGGTAAGT 14529 Query 288454 GTCTTGACGAATATCTGCATTAT 288476 || ||||| || || ||||| || Sbjct 14530 GTTTTGACAAAAATTTGCATGAT 14552 Score = 86.0 bits (94), Expect = 1e-11 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 288363 TGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 ||| |||||||| || || ||||| || ||||| |||||||| || | || | ||| Sbjct 12597 TGGAATTCCTTCCTTGTCTTGGATCTTGGCTTTGACGTTTTCGATGGTGTCAGAAGCTTC 12656 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||||| | ||||| || || ||||| |||||||||||||| || |||||| Sbjct 12657 AACTTCCAATGTGATGGTTTTTCCGGTGAGAGTCTTGACGAAGATTTGCATT 12708 Score = 84.2 bits (92), Expect = 5e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || |||||||||| | ||||| |||||||||||| || || ||||| || ||| Sbjct 13379 CCAGCGAAGATCAATCTTTGTTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATCTTGGCT 13438 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || || ||||| || | || | ||| ||||| | ||||| || || ||||||| | Sbjct 13439 TTGACATTTTCGATGGTGTCAGAAGCTTCGACTTCCAAAGTGATGGTTTTTCCGGTCAAA 13498 Query 288454 GTCTTGACGAATATCTGCATT 288474 || |||||||| || |||||| Sbjct 13499 GTTTTGACGAAGATTTGCATT 13519 >seq30935 Length=6295 Score = 138 bits (152), Expect = 3e-27 Identities = 145/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || |||||||| || ||||||| || || ||||| || || | ||||||||| |||||| Sbjct 1458 TCCTTTTGGATGTTGTAGTCGGAAAGAGTACGTCCATCCTCGAGTTGTTTTCCGGCGAAG 1399 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| | |||||| |||||||||||| || || ||||| || ||||| || ||| Sbjct 1398 ATCAATCTTTGTTGATCTGGTGGGATTCCTTCCTTGTCTTGGATCTTGGCTTTGACATTT 1339 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || | || |||||||| || || ||||| || ||||||||||||||| Sbjct 1338 TCGATGGTGTCCGAGGCCTCGACTTCGAGGGTAATTGTCTTACCCGTCAGAGTCTTGACG 1279 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 1278 AAGATTTGCAT 1268 >seq16010 Length=816 Score = 123 bits (136), Expect = 6e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| || | ||| | ||| || | ||| | || ||| |||||||| || || || | Sbjct 137 TCCTCCTCTGAGACGAAGAACCAAATGGAGTGTTGATTCCTTTTGGATGTTGTAATCAGA 196 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || || | ||| ||||| ||||||||||| || || |||| | |||||| ||| Sbjct 197 AAGAGTTCTTCCATCTTCCAATTGTTTTCCGGCAAAAATCAATCTTTGTTGATGTGGTGG 256 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||||||||| ||||| || ||||| ||||| || ||||| || | ||| | ||| || Sbjct 257 GATTCCTTCGTTATCTTGAATTTTTGCTTTGACATTTTCAATTGTGTCGGAAGCTTCGAC 316 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||||| ||||| || || || |||| || ||||||| || ||||| Sbjct 317 TTCGAGTGTGATAGTTTTTCCAGTCAATGTTTTGACGACGATTTGCAT 364 Score = 89.7 bits (98), Expect = 1e-12 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 288363 TGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 |||||||||||| || |||||||| || ||||| || ||||| || | ||| | ||| Sbjct 26 TGGGATTCCTTCCTTGTCCTGGATCTTGGCTTTGACATTTTCAATGGTGTCGGAAGCTTC 85 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 |||||||| ||||| || || ||||| || || |||||||| || || ||| Sbjct 86 GACTTCGAGGGTGATGGTTTTTCCGGTAAGTGTTTTGACGAAGATTTGAATT 137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179147178468002