Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq31956 109 7e-19 >seq31956 Length=51777 Score = 109 bits (120), Expect = 7e-19 Identities = 285/430 (66%), Gaps = 10/430 (2%) Strand=Plus/Plus Query 113603 TAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATCGAGGACAACTTG 113662 || ||||| || ||||| | |||| |||||| |||| | |||||| || | | | | Sbjct 35165 TAATACATTCCAGTCTTCAATCCCTTCTTCCAACCATAGAAATGCATTGATGTGATCGCG 35224 Query 113663 GAGAGTGTTGGACTTTCCAT--GAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTC 113720 | |||| | |||| ||| | |||| |||||| |||||||| ||||| || Sbjct 35225 GCATAACTTGGTTTAGCCATATGAATA--TTCAAACTTTGTGATTGATCAATGAAAGCTC 35282 Query 113721 CACGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGA 113780 | ||||| || ||||| ||||| | || || | |||||||| || ||| |||| | Sbjct 35283 CGCGATCTGCAGCCATCTCAATAATCTCTTTTTGCGATATTTCCCAAACTGTTTTGTACA 35342 Query 113781 GGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGAGCCACCCGCCTTGACCA 113840 | || || ||| ||| || | | |||||||| || || ||| || || | | Sbjct 35343 ACTCTTTGATTTCAGTTGGAATTTGTTCAATATTTTGAATCGATCCATT-GC--TGGCAA 35399 Query 113841 TGA---GATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAGAT 113897 | | ||| |||||||| | ||| | |||| | | ||||| || | || Sbjct 35400 TCAATCGATTTTTCATATCATCATCCCATAATCCAAGTTCAACCAAATCCTTCAACAAAT 35459 Query 113898 GCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGT 113957 | |||||||| || || || | | |||| ||||||||||| |||| Sbjct 35460 GTGGATTGACAATTTGGAAATCGCCAGACAAAACACGTCGAGAATAGATATTGGAAGTGT 35519 Query 113958 ATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATGGGTG 114017 |||| |||| |||||||||| || | |||||| || ||||| || || ||||| || | Sbjct 35520 ATGGTTCAATTGACTCATTGTTTCCGAGGATTTGAGCTGTGGAAGCAGTTGGCATTGGAG 35579 Query 114018 CCATGAGAAG 114027 |||||||||| Sbjct 35580 CCATGAGAAG 35589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597103017631720