Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq13386 120 3e-22 seq16010 82.4 8e-11 >seq13386 Length=19191 Score = 120 bits (132), Expect = 3e-22 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || |||||||||||||||||||| || | || ||| | ||||||| | || || ||| Sbjct 12229 GTTGATTCTTTTTGAATGTTGTAGTCGGAGAGGGTTCTTCCGTCTTCCAATTGTTTTCCG 12288 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || | | || ||||| || || ||||||||||| ||||| | |||| ||||| Sbjct 12289 GCGAAGATCAATCTTTGTTGGTCTGGTGGGATTCCTTCTTTGTCTTG-AATTTTAGCTTT 12347 Query 64367 -ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 ||| || | |||||| || || ||||| | || | |||||| ||||||||||| Sbjct 12348 GACATTTTCGATGGTATCAGAAGCCTCAACTTCAAGGGTGATGGTCTTTCCGGTCAAAGT 12407 Query 64426 TTTTACGAAAATTTGCAT 64443 ||| || || |||||||| Sbjct 12408 TTTGACAAAGATTTGCAT 12425 Score = 111 bits (122), Expect = 2e-19 Identities = 153/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || | ||||| |||||||| ||||| |||||||| || | || ||||| | || Sbjct 11985 AAGAACCAAATGAAGAGTCGATTCCTTTTGGATGTTGTAGTCGGAGAGAGTGCGACCATC 12044 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| | || || ||||| | ||||| || || || || || || |||||||| || || Sbjct 12045 TTCCAATTGTTTTCCGGCGAAGATGAGACGTTGTTGATCTGGTGGGATTCCTTCCTTGTC 12104 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 ||| || || ||| || || | || ||| ||| || ||||| | || | ||| Sbjct 12105 TTGGATCTTGGCCTTGACGTTTTCGATGGTGTCAGAGGCTTCGACTTCCAAGGTGATGGT 12164 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 |||||||| | || || ||||||||||||||| Sbjct 12165 TTTGCCGGTGAGGGTCTTGACGAAAATTTGCATT 12198 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || | |||||| | || | |||| || ||||||||||| |||||||| || | | Sbjct 13976 CCTCCTCTCAATCTCAAAACCAAGTGAAGTGTTGATTCTTTTTGGATGTTGTAGTCGGAG 14035 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||| | | ||||| | || || ||||| | || | | || ||||| || ||| Sbjct 14036 AGGGTTCTTCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGTGGA 14095 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 |||||||| || ||||| || || ||| || ||| | |||||| || || ||| Sbjct 14096 ATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTATCAGAAGCTTCGACT 14155 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || | ||| | ||| || || ||||||||||| || || ||||||||| Sbjct 14156 TCCAAAGTGATGGTTTTTCCAGTCAAAGTTTTGACAAAGATTTGCATT 14203 Score = 102 bits (112), Expect = 8e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || |||||||| |||||||| || | || || | | ||||| | || || ||| Sbjct 13550 GTGGACTCTTTTTGGATGTTGTAGTCGGAGAGAGTTCTTCCATCTTCCAATTGTTTTCCG 13609 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| |||| | | || ||||| || |||||||||||||| ||||| | |||||||||| Sbjct 13610 GCAAAAATCAATCTTTGTTGGTCTGGTGGAATTCCTTCTTTATCTTG-AATTTTTGCTTT 13668 Query 64367 -ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 ||| || | ||| || || || ||||| | || | ||| || || ||||| || Sbjct 13669 GACATTTTCAATTGTGTCCGAAGCTTCAACTTCCAATGTGATGGTTTTTCCAGTCAATGT 13728 Query 64426 TTTTACGAAAATTTGCAT 64443 ||| || || |||||||| Sbjct 13729 TTTGACAAAGATTTGCAT 13746 Score = 93.3 bits (102), Expect = 4e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || ||||| ||||| ||||||||||| | | ||||| | ||||| | || Sbjct 13772 TGAAGGGTAGATTCCTTTTGGATGTTGTAATCAGACAATGTGCGTCCATCTTCCAATTGT 13831 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || |||||| ||||||| || || || || || || |||||||| || ||||| | | || Sbjct 13832 TTTCCGGCAAAAATGAGACGTTGTTGATCTGGTGGGATTCCTTCCTTGTCTTGGA-TCTT 13890 Query 64361 TGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419 ||||| ||| || | || ||| || || ||||| | || | || || || || Sbjct 13891 AGCTTTGACATTTTCGATGGTGTCAGAAGCTTCAACTTCAAGTGTGATTGTTTTTCCAGT 13950 Query 64420 CAAAGTTTTTACGAAAATTTGCATT 64444 | || || ||||| ||||||||| Sbjct 13951 GAGTGTCTTGACGAAGATTTGCATT 13975 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| |||||||| || ||||| | | ||| | | ||||| | || || ||| Sbjct 13041 GTTGATTCCTTTTGAATATTATAATCCGAAAGGGTTCTGCCATCTTCCAATTGTTTTCCG 13100 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || | | || ||||| || |||||||||||||| ||||| || || ||| Sbjct 13101 GCGAAGATCAATCTTTGTTGGTCTGGTGGAATTCCTTCTTTGTCTTGGATCTTGGCCTTG 13160 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | || ||| || || ||||| | || | || |||||||| | || Sbjct 13161 ACATTTTCAATGGTGTCAGAAGCTTCGACTTCCAAGGTGATAGTTTTGCCGGTGAGGGTC 13220 Query 64427 TTTACGAAAATTTGCAT 64443 || |||||||||||||| Sbjct 13221 TTGACGAAAATTTGCAT 13237 Score = 82.4 bits (90), Expect = 8e-11 Identities = 99/132 (75%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAAC 64371 ||||| || || ||||| || |||||||||||||| ||||| | | || ||||| ||| Sbjct 14419 ATGAGACGTTGTTGGTCTGGTGGAATTCCTTCTTTGTCTTG-AATCTTGGCTTTCACATT 14477 Query 64372 CTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTAC 64431 || | |||||| || || ||||| | || | |||||| ||||| | ||||| || Sbjct 14478 TTCGATGGTATCAGAAGCTTCGACTTCAAGTGTGATGGTCTTTCCGGTAAGTGTTTTGAC 14537 Query 64432 GAAAATTTGCAT 64443 ||||||||||| Sbjct 14538 AAAAATTTGCAT 14549 >seq16010 Length=816 Score = 82.4 bits (90), Expect = 8e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || | ||| | || ||||| ||||| ||||||||||| | | || | | || Sbjct 152 AAGAACCAAATGGAGTGTTGATTCCTTTTGGATGTTGTAATCAGAAAGAGTTCTTCCATC 211 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| | || || |||||| |||| | | || || | || || |||||||| || || Sbjct 212 TTCCAATTGTTTTCCGGCAAAAATCAATCTTTGTTGATGTGGTGGGATTCCTTCGTTATC 271 Query 64351 TTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGG 64409 ||| | |||||||||| ||| || | ||| || || || ||||| | || | | Sbjct 272 TTG-AATTTTTGCTTTGACATTTTCAATTGTGTCGGAAGCTTCGACTTCGAGTGTGATAG 330 Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | || || ||||| ||||| |||| |||||||| Sbjct 331 TTTTTCCAGTCAATGTTTTGACGACGATTTGCAT 364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499435205251960