Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_011056.1 Length=75811 Score E Sequences producing significant alignments: (Bits) Value seq17056 349 2e-91 >seq17056 Length=1684 Score = 349 bits (386), Expect = 2e-91 Identities = 591/852 (69%), Gaps = 7/852 (1%) Strand=Plus/Plus Query 65913 ATTCCCACCGGCTCGATAGCTCTGGACGCCGCTCTCGGCATCGGGGGGTATCCGAGGGGC 65972 || || ||||| ||||| || ||||||| ||| ||||||||||| ||| ||| | ||| Sbjct 428 ATCCCGACCGGTTCGATCGCACTGGACGTCGCGCTCGGCATCGGCGGGCTCCCGCGCGGC 487 Query 65973 CGGGTAGTGGAGATCTACGGTCCTGAGTCTTCAGGGAAGTCAACGTTGTGCCTCCACGCG 66032 || | | |||||||||||||| ||||| || || ||| | || | || |||||| Sbjct 488 CGCATCATCGAGATCTACGGTCCGGAGTCCTCGGGCAAGACCACTCTCACGCTGCACGCG 547 Query 66033 GTGGCCAATGCCCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCCGAACATTCTCTC 66092 | || || || ||| ||||| |||| |||||| | |||||||||||| || | ||| Sbjct 548 ATCGCGAACGCGCAGCGCGCCGGCGGCATCGCCGCGTTCATCGACGCCGAGCACGCGCTC 607 Query 66093 GACCCTGAGTACGCCGCGGCGCTCGGGGTGGATGTCGACAATCTCGTGGTTGTGCAGCCA 66152 ||||| |||||||| | |||||| || || |||| || | || |||||| Sbjct 608 GACCCCGAGTACGCGCAGAAGCTCGGCGTCGACATCGATTCGCTGCTCGTCTCGCAGCCC 667 Query 66153 GACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAGTCTGGCGAGGTTTCC 66212 ||||| || |||||||| || ||||||| ||| | || || || || ||| | Sbjct 668 GACACGGGTGAGCAGGCGCTCGAGATCGCCGACATGCTGATCCGTTCGGGGTCGGTCGAC 727 Query 66213 ATCATCGTTGTGGACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAGCTCGAAGGGGACATC 66272 | ||||| | ||||| || ||||| || |||||| ||| ||| |||| || || || Sbjct 728 CTGATCGTCATCGACTCGGTCGCGGCGCTCGTGCCGAAGGCCGAGATCGAGGGCGAGATG 787 Query 66273 GGGGACTCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCCATGCGCAAGCTGACC 66332 || ||| ||||| |||||||| || || || ||||| ||||| | |||||| |||| Sbjct 788 GGCGACAGCCACGTGGGCCTGCAGGCGCGACTCATGTCGCAGGCGCTCCGCAAGATGACG 847 Query 66333 GGCACGATTG--CCAGCACCAACACGCTCACCCTGTGGGTGAATCAGCTGCGCGAGAAGA 66390 ||| | || |||| ||||| || | | | | | || ||||| ||||||||| Sbjct 848 GGC-GGTCTGAACCAG-ACCAAGACCACCGCGATCTTCATCAACCAGCTCCGCGAGAAGG 905 Query 66391 TCGGCAACGTGGGCTACGGCCCGAATGAGACCACCACCGGTGGTAAGGCTCTGCGCTTCT 66450 |||| ||| || |||| ||||| ||| | || || ||||| || |||| Sbjct 906 TCGG---CGTCTTCTTCGGCAGCCCCGAGACGACCTCGGGGGGCAAGGCGCTCAAGTTCT 962 Query 66451 ACGCCTCGGTGCGTATGGATGTCCGCAGGATCGCCACCGAGAAGGAAGGCGATGAGGCTG 66510 |||| ||||| ||| | || ||||| | ||| ||| |||||| ||| | || || | Sbjct 963 ACGCGTCGGTCCGTCTCGACATCCGCCGCATCCAGACCCTGAAGGACGGCCAGGACGCGG 1022 Query 66511 TCGGCAACCGCACGCGCGTGAAGGTTGTCAAGAACAAGCTGGCGCCTCCGCACCGCCAGG 66570 ||||||||||||| ||||| ||||| |||||||||||| |||| || || | |||| Sbjct 1023 TCGGCAACCGCACCCGCGTCAAGGTCGTCAAGAACAAGATGGCTCCCCCCTTCAAGCAGG 1082 Query 66571 CTGAGTTTTCCATCGTCTACGGCGAGGGCATTTCCCGCGAGGCTGAACTCCTCGACATGG 66630 | ||||| |||| ||||||||| ||||| || ||||||| | ||| ||||| | | Sbjct 1083 CCGAGTTCGACATCCTCTACGGCGTCGGCATCTCTCGCGAGGGTTCGCTCATCGACTTCG 1142 Query 66631 CCGTTTCCCGAGGGCTCATCAAGAAGTCTGGGGCCTGGTTCAAGTACGGGGACAAGAACA 66690 || | || ||| |||||||| || |||||| || |||| | | | | Sbjct 1143 GTGTCGAGCACGGTCTCGTCAAGAAGAGCGGTTCCTGGTACACCTACGACGGCGATCAGC 1202 Query 66691 TCGGCCAGGGCAAGCCCAAGACCGTGCAGTGGCTGAAGGACAACCCGGACGTCGCCGCCT 66750 | |||||||||| | || || | | |||| || || |||| ||||||||| Sbjct 1203 TGGGCCAGGGCATGGAGAATGCCCGCCGCTTCCTGATCGAGCACGCGGATGTCGCCGCCG 1262 Query 66751 CCATCGAACAGA 66762 |||||| ||| Sbjct 1263 AGATCGAAGAGA 1274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242371229530628