Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_011273.1 Length=164602 Score E Sequences producing significant alignments: (Bits) Value seq18015 857 0.0 seq19961 443 2e-119 seq18052 365 5e-96 >seq18015 Length=1372 Score = 857 bits (950), Expect = 0.0 Identities = 762/948 (80%), Gaps = 10/948 (1%) Strand=Plus/Minus Query 155932 CGCGCCATCAACTGGAACCGCGTGATCGA---CGAGAAGGACGCGGAGGTGTGGAACCGG 155988 || || |||||||||||||| |||||| |||||||||| ||||| |||||||| Sbjct 1202 CGGGCGATCAACTGGAACCG---GATCGAGGACGAGAAGGACCTCGAGGTCTGGAACCGC 1146 Query 155989 CTGACCAACAACTTCTGGCTGCCGGAGAAGATCCCGGTGTCCAATGACGTCCAGTCGTGG 156048 ||| |||||||||||||||||| |||||| | ||| |||| || ||||| ||||||||| Sbjct 1145 CTGGTCAACAACTTCTGGCTGCCCGAGAAGGTGCCGCTGTCGAACGACGTGCAGTCGTGG 1086 Query 156049 CACCAGCTGACCGAGGAAGAGCGCCTGATCACCATGCGGGTGTTCACCGGCCTGACGATG 156108 ||| || | | |||| ||| |||||||||| |||||||| || || || || Sbjct 1085 GCGACGCTCACGCCGCAGGAGCAGCTGCTCACCATGCGCGTGTTCACGGGTCTCACCCTG 1026 Query 156109 CTGGACACCATCCAGGGCACCGTCGGCGCGGTCTCGCTCATCCCGGACGCCATCACCCCG 156168 || ||||| ||||||||||| |||||||| |||||||| ||||| ||||| ||||| ||| Sbjct 1025 CTCGACACGATCCAGGGCACGGTCGGCGCCGTCTCGCTGATCCCCGACGCGATCACTCCG 966 Query 156169 CACGAGGAGGCGGTGTACACCAACATCGCGTTCATGGAGAGCGTGCACGCACGCAGCTAC 156228 ||||||||||| || ||||| |||||||||||||||||| |||||||| |||||| Sbjct 965 CACGAGGAGGCCGTCTACACGAACATCGCGTTCATGGAGTCGGTGCACGCCAAGAGCTAC 906 Query 156229 TCGAACATCTTCTCGACGCTGTGCTCCACCAAGGAGATCGACGCCGCGTTCCGCTGGTCG 156288 ||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||| Sbjct 905 TCGTCGATCTTCTCGACGCTGTGCTCCACGCAGGAGATCGACGACGCGTTCCGCTGGTCG 846 Query 156289 GAGGAGAACGCCAACCTGCAGAAGAAGGCTGAGATCGTGCTCAGCTACTACAACGGTGAC 156348 | |||||| | ||||||||||||||||| |||| | || ||||||| | || ||| Sbjct 845 GTTGAGAACCCGAACCTGCAGAAGAAGGCGTCGATCATCGTCGACTACTACGAGGGCGAC 786 Query 156349 GACCCGCTCAAGCGCAAGGTCGCCTCCACGCTGCTGGAGGGCTTCCTGTTCTACAGCGGC 156408 |||||||| ||||||||| |||||||||||||||| || |||||||||||| ||| Sbjct 785 GACCCGCTGAAGCGCAAGATCGCCTCCACGCTGCTCGAATCGTTCCTGTTCTACTCGGGC 726 Query 156409 TTCTACCTGCCGATGTTCTGGTCGTCGCGAGGCAAGCTCACCAACACCGCCGACATGATC 156468 ||||||||||| |||| ||||||| | | ||||||||||||||| || ||| | ||| Sbjct 725 TTCTACCTGCCCATGTACTGGTCGAGCCACGCCAAGCTCACCAACACGGCAGACCTCATC 666 Query 156469 CGGCTCATCATCCGGGACGAGGCCGTGCACGGCTACTACATCGGCTACAAGTTCCAGAAG 156528 || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 665 CGCCTCATCATCCGCGACGAGGCCGTGCACGGCTACTACATCGGCTACAAGTTCCAGAAG 606 Query 156529 GGCCTGGAGAAGGAGACCAAGGCCCGCCAGCAGGAACTCAAGGACTACACCTATGAGCTG 156588 ||||| ||||| |||||| ||| || | ||||| |||||||| ||||||| ||| Sbjct 605 GGCCTCGAGAACGAGACCGAGGAGCGTCGCCAGGAGCTCAAGGATTACACCTTCTCGCTC 546 Query 156589 CTGTTCGAGCTGTTCGACAACGAGCAGGAGTACACCCAGGACCTCTACGACGCCACCGGC 156648 ||| ||| |||| ||| |||||| |||||||| |||||||||||| | ||| Sbjct 545 ATGTACGAACTGTACGAGAACGAGGTCAAGTACACCGCCGACCTCTACGACCCGGTGGGC 486 Query 156649 CAGACCGAGGACGTGAAGAAGTTCCTGCGGTACAACGGCAACAAGGCCCTGCAGAACCTG 156708 | ||||||||||| ||||||||||||| ||||||| |||||||| || |||||| Sbjct 485 CTCACCGAGGACGTCAAGAAGTTCCTGCACTACAACGCGAACAAGGCGCTCATGAACCTC 426 Query 156709 GGCTACGACGCGCTGTTCAGC-CGCAG-CGACTGCGACGTCAACCCGGCCATCCTGAGCG 156766 |||||||| || ||||| | | || ||| |||||| |||||||| |||||| | Sbjct 425 GGCTACGAGCCGATGTTCCCCAAGGAGATGAC--CGACGTGAACCCGGCGATCCTGTCGG 368 Query 156767 CGCTGTCGCCCGGTGGAGACGAGAACCACGACTTCTTCTCGGGGTCGGGCAGCACGTACG 156826 |||||||||| | ||||||||||| |||||||||||||| ||||| | |||||| Sbjct 367 CGCTGTCGCCGAACGCCGACGAGAACCATGACTTCTTCTCGGGCTCGGGTTCCTCGTACG 308 Query 156827 TCATGGCCAAGGGTGTGGTCACCGAAGACGACGACTGGGACTTCTGAT 156874 |||| | ||||| || | |||||| ||||| |||||||||||||||| Sbjct 307 TCATCGGCAAGGCCGTCGCCACCGAGGACGAGGACTGGGACTTCTGAT 260 >seq19961 Length=5435 Score = 443 bits (490), Expect = 2e-119 Identities = 671/947 (71%), Gaps = 22/947 (2%) Strand=Plus/Plus Query 155936 CCATCAACTGGAACCGCGTGATCGACGAGAAGGACGCGGAGGTGTGGAACCGGCTGACCA 155995 |||||||||||||||| ||| ||||||| |||||| ||||||||||||||||||||| Sbjct 4211 CCATCAACTGGAACCGGGTGCTCGACGACAAGGACCTGGAGGTGTGGAACCGGCTGACGG 4270 Query 155996 ACAACTTCTGGCTGCCGGAGAAGATCCCGGTGTCCAATGACGTCCAGTCGTGGCACCAGC 156055 |||||||||||||| |||||| | ||| | || || ||| ||| | ||||| | Sbjct 4271 CGAACTTCTGGCTGCCCGAGAAGGTTCCGCTCTCGAACGACATCCCCGCATGGCAGCGCA 4330 Query 156056 TGACCGAGGAAGAGCGCCTGATCACCATGCGGGTGTTCACCGGCCTGACGATGCTGGACA 156115 ||| | || |||||| | || ||||||||||||||||| || |||||||| |||| Sbjct 4331 TGAGCCCTGAGGAGCGCACCCTGACGATGCGGGTGTTCACCGGGCTCACGATGCTCGACA 4390 Query 156116 CCATCCAGGGCACCGTCGGCGCGGTCTCGCTCATCCCGGACGCCATCACCCCGCACGAGG 156175 || | |||| || ||||| | | ||| | |||| ||| || || |||||||| Sbjct 4391 CCGTGCAGGCGACGGTCGGTGAGATCTGCCAGATCCAGGATGCGCAGACGGAGCACGAGG 4450 Query 156176 AGGCGGTGTACACCAACATCGCGTTCATGGAGAGCGTGCACGCACGCAGCTACTCGAACA 156235 ||||||| ||||| |||||||| |||||| || |||||||| ||| |||||| Sbjct 4451 AGGCGGTCTACACGAACATCGCCTTCATGCAGTCGGTGCACGCGCGCTCCTACTCCTCGG 4510 Query 156236 TCTTCTCGACGCTGTGCTCCACCAAGGAGATCGACGCCGCGTTCCGCTGGTCGGAGGAGA 156295 | |||||||| || |||||| |||||||||| || | || ||| ||| || | Sbjct 4511 TGTTCTCGACCCTCACCTCCACGTCCGAGATCGACGAGGCATATCGGTGGGCGGTGGGCA 4570 Query 156296 ACGCCAACCTGCAGAAGAAG-GCTG--AGATCGTGCTCAGCTACTACAACGGTGACGACC 156352 ||| | |||| | || || |||| || |||||| ||||| |||| || | Sbjct 4571 ACG---ATCTGCTGCAGGAGCGCTGCAAGCGGGTGCTCGCGCACTACTCCGGTCCGGATC 4627 Query 156353 CGCTCAAGCGCAAGGTCGCCTCCACGCTGCTGGAGGGCTTCCTGTTCTACAGCGGCTTCT 156412 |||| ||||||||||| | || || |||||| | | ||| |||| ||||||| Sbjct 4628 CGCTGAAGCGCAAGGTGTCGTCGACCCTGCTGTCGTCGCTGCTGCTCTATGCGGGCTTCT 4687 Query 156413 ACCTGCCGATGTTCTGGTCGTCGCGAGGCAAGCTCACCAACACCGCCGACATGATCCGGC 156472 | |||||| || || ||| || | | || |||||||||||||||||| |||| | Sbjct 4688 ATCTGCCGCTGCACTTCTCGGTGCACGCGACCCTGACCAACACCGCCGACATGGTCCGCC 4747 Query 156473 TCATCATCCGGGACGAGGCCGTGCACGGCTACTACATCGGCTACAAGTTCCAGAAGGGCC 156532 | ||| | || ||| |||| ||||||||||||||| ||||||||||||||| ||| | Sbjct 4748 TGATCCTGCGCGACAAGGCGGTGCACGGCTACTACTCGGGCTACAAGTTCCAGCGGGGGC 4807 Query 156533 TGGAGAAG------GAGACCAAGGCCCGCCAGCAGGAACTCAAGGACTACACCTATGAGC 156586 | | |||| ||||| | || |||| || | |||| |||| | || Sbjct 4808 TCGCGAAGCTCGGCGAGACGGA-GCGCGCC-----GAGATGCGCGACTTCACCCTCGCGC 4861 Query 156587 TGCTGTTCGAGCTGTTCGACAACGAGCAGGAGTACACCCAGGACCTCTACGACGCCACCG 156646 |||| ||| || | ||| |||| | ||| | ||| |||||||| || || Sbjct 4862 TGCTCGACGACCTCTACGAACTGGAGCTCGCCTACTCGGGGGAGCTCTACGAGCCCCTCG 4921 Query 156647 GCCAGACCGAGGACGTGAAGAAGTTCCTGCGGTACAACGGCAACAAGGCCCTGCAGAACC 156706 | | | || |||||| | |||| |||| ||||||| |||||||| || ||||| Sbjct 4922 GACTCATGGACGACGTGGCGGTGTTCGTGCGTTACAACGCGAACAAGGCGCTCATGAACC 4981 Query 156707 TGGGCTACGACGCGCTGTT-CAGCCGCAGC-GACTGCGACGTCAACCCGGCCATCCTGAG 156764 |||||||| |||| ||| | |||| ||| ||| | || ||||| | ||||| Sbjct 4982 TGGGCTACCCGGCGCGGTTCCCGCCGGAGCAGAC--CCGGGTGAACCCCGAGATCCTCGC 5039 Query 156765 CGCGCTGTCGCCCGGTGGAGACGAGAACCACGACTTCTTCTCGGGGTCGGGCAGCACGTA 156824 ||||| |||||||| | |||||||||||||||||||||||||| || ||| | | || Sbjct 5040 GGCGCTCTCGCCCGGGAGCGACGAGAACCACGACTTCTTCTCGGGTTCCGGCTCCTCCTA 5099 Query 156825 CGTCATGGCCAAGGGTGTGGTCACCGAAGACGACGACTGGGACTTCT 156871 ||| |||| | || | || |||| ||||| ||||||||||||| Sbjct 5100 CGTGATGGGCGTCGGAGAGGACACCACCGACGAGGACTGGGACTTCT 5146 >seq18052 Length=846 Score = 365 bits (404), Expect = 5e-96 Identities = 348/444 (78%), Gaps = 1/444 (0%) Strand=Plus/Minus Query 152876 GGATGAAGTCATCTTCGAGAGATTCACCGACCGCGCCCGTCGCGTCTGCGTCCTCGCCCA 152935 ||| |||| ||| |||||||||||||||||||| ||||| || || |||||||||||| Sbjct 716 GGAGGAAG-CATGTTCGAGAGATTCACCGACCGGGCCCGCCGGGTGGTCGTCCTCGCCCA 658 Query 152936 AGAGGAAGCGCGCATGCTCAACCATGCGTACATCGGCACCGAGCATCTGCTGCTCGGGCT 152995 ||| || ||| ||||||||||| ||||||||||||||||| | |||||||| || Sbjct 657 AGAAGAGGCGAAGATGCTCAACCACAACTACATCGGCACCGAGCACATCCTGCTCGGCCT 598 Query 152996 GGTCCACGAGGGCGAGGGCGTAGCCGCCAAGGCGCTGCAGGCGCTCGACATCAACCTGGA 153055 | |||||||||||||||| || ||||| |||||||| || |||||| ||| || || Sbjct 597 GATCCACGAGGGCGAGGGTGTCGCCGCGAAGGCGCTCGAGCAGCTCGAGATCTCGCTCGA 538 Query 153056 GGAGGTGCGTGCCGAGGTCGAGGAGATCATCGGCCACGGCCAGCAGGCACCCACCGGGCA 153115 | ||||| | |||| || ||||||||| |||||||||| | ||| |||| || Sbjct 537 CGCCGTGCGCGAGCAGGTGACCGACATCATCGGCACCGGCCAGCAGCCGCCCGCCGGCCA 478 Query 153116 CATCCCGTTCACCGACCGCTCCAAGCGCGTCCTGGAGCTGTCGCTGCGCGAGGCGCTGCA 153175 |||||| ||||| ||| ||||| || || |||||| ||||||||||||||||| Sbjct 477 CATCCCCTTCACGCCGCGCGCCAAGAAGGTGCTCGAGCTGAGCCTGCGCGAGGCGCTGCA 418 Query 153176 GCTCGGCCACAACTACATCGGCACCGAGCATCTCCTGCTGGCCCTGATCCGCGAGGGTGA 153235 |||||| |||| |||||||||||||||||| ||||||| | |||||||||||||| || Sbjct 417 GCTCGGACACAGCTACATCGGCACCGAGCACATCCTGCTCGGTCTGATCCGCGAGGGCGA 358 Query 153236 GGGCGTGGGCTGCCAGGTGCTGGTGAAGCGCGGCGCGGAGCTGACCAAGGTCCGCCAGGT 153295 |||||| | | ||||||||||| |||| |||||| || || | | || |||||| Sbjct 357 GGGCGTCGCCGCTCAGGTGCTGGTCAAGCTCGGCGCCGACCTCAACCGCGTGCGCCAGAC 298 Query 153296 GGTCATCCAGCTGCTGTCCGGGTA 153319 || ||||||||||| ||||| || Sbjct 297 CGTGATCCAGCTGCTCTCCGGCTA 274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 526377498553680