Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq13386 152 4e-32 seq30935 105 5e-18 seq16010 102 6e-17 >seq13386 Length=19191 Score = 152 bits (168), Expect = 4e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| |||||| ||||| || ||||| || || |||||||| |||||||| ||| | Sbjct 13976 CCTCCTCTCAATCTCAAAACCAAGTGAAGTGTTGATTCTTTTTGGATGTTGTAGTCGGAG 14035 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || |||| | ||||| |||||||| || ||| | ||||| | |||||||| |||| Sbjct 14036 AGGGTTCTTCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGTGGA 14095 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||||||||| || ||| || || | || || ||||| | ||| || Sbjct 14096 ATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTATCAGAAGCTTCGACT 14155 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || |||||||| || |||| |||||| ||||| |||||||| Sbjct 14156 TCCAAAGTGATGGTTTTTCCAGTCAAAGTTTTGACAAAGATTTGCAT 14202 Score = 136 bits (150), Expect = 3e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || || ||||| || |||||||| |||||||| ||| |||| |||| | ||||| Sbjct 13538 ACCAAGTGGAGGGTGGACTCTTTTTGGATGTTGTAGTCGGAGAGAGTTCTTCCATCTTCC 13597 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 |||||||| || || | ||||| | |||||||| |||||||||||| || || | Sbjct 13598 AATTGTTTTCCGGCAAAAATCAATCTTTGTTGGTCTGGTGGAATTCCTTCTTTATCTTGA 13657 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 ||||| ||| ||| |||| || || || | ||| || || || || |||||||| Sbjct 13658 ATTTTTGCTTTGACATTTTCAATTGTGTCCGAAGCTTCAACTTCCAATGTGATGGTTTTT 13717 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || |||| ||||| ||||| ||||||||| Sbjct 13718 CCAGTCAATGTTTTGACAAAGATTTGCATA 13747 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| |||||| ||||| || || || || || || ||||| || || ||||| Sbjct 13011 CCTCCTCTCAATCTCAAAACCAAGTGGAGTGTTGATTCCTTTTGAATATTATAATCCGAA 13070 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || |||| | ||||| |||||||| || ||| | ||||| | |||||||| |||| Sbjct 13071 AGGGTTCTGCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGTGGA 13130 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||| ||||| || ||| || ||| |||| || || || | ||| || Sbjct 13131 ATTCCTTCTTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCAGAAGCTTCGACT 13190 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || ||||| || ||||| || || || || || || |||||||||||| Sbjct 13191 TCCAAGGTGATAGTTTTGCCGGTGAGGGTCTTGACGAAAATTTGCATA 13238 Score = 113 bits (124), Expect = 3e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| |||||||| || || || ||||| |||||||| ||| |||| | | | ||||| Sbjct 11988 AACCAAATGAAGAGTCGATTCCTTTTGGATGTTGTAGTCGGAGAGAGTGCGACCATCTTC 12047 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 |||||||| || ||| | || | ||| ||||| || ||| |||||||||||||| Sbjct 12048 CAATTGTTTTCCGGCGAAGATGAGACGTTGTTGATCTGGTGGGATTCCTTCCTTGTCTTG 12107 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 || ||| || || |||| || || || ||| || || ||||| |||||||| Sbjct 12108 GATCTTGGCCTTGACGTTTTCGATGGTGTCAGAGGCTTCGACTTCCAAGGTGATGGTTTT 12167 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || || || || ||||||||||| Sbjct 12168 GCCGGTGAGGGTCTTGACGAAAATTTGCAT 12197 Score = 98.7 bits (108), Expect = 7e-16 Identities = 150/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCT 15024 ||| || ||||||||||| || ||||| ||||||||||| || ||| || | ||| Sbjct 13765 AACCAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAATCA--GACAATGTGCGTCCATCT 13822 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || |||||||| || || | || | ||| ||||| || ||| |||||||||||||| Sbjct 13823 TCCAATTGTTTTCCGGCAAAAATGAGACGTTGTTGATCTGGTGGGATTCCTTCCTTGTCT 13882 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 || || ||| ||| |||| || || || | ||| || || | || || ||| Sbjct 13883 TGGATCTTAGCTTTGACATTTTCGATGGTGTCAGAAGCTTCAACTTCAAGTGTGATTGTT 13942 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || || || || || || |||||||| Sbjct 13943 TTTCCAGTGAGTGTCTTGACGAAGATTTGCAT 13974 Score = 87.8 bits (96), Expect = 1e-12 Identities = 115/157 (73%), Gaps = 3/157 (2%) Strand=Plus/Plus Query 15037 CCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTT 15096 || ||| | || | ||| |||||||| |||||||||||| ||||| ||| ||| | Sbjct 14410 CCTGCGAAGATGAGACGTTGTTGGTCTGGTGGAATTCCTTCTTTGTCTTGAATCTTGGCT 14469 Query 15097 TTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGA 15156 || ||| |||| || ||||| | ||| || || | || ||||| || || || || Sbjct 14470 TTCACATTTTCGATGGTATCAGAAGCTTCGACTTCAAGTGTGATGGTCTTTCCGGTAAGT 14529 Query 15157 GTTTTTACAAAAATTTGCAT-ATT--TGAAATAAATT 15190 ||||| |||||||||||||| ||| ||||| | ||| Sbjct 14530 GTTTTGACAAAAATTTGCATGATTTCTGAAAAATATT 14566 Score = 86.0 bits (94), Expect = 4e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 15037 CCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTT 15096 |||||| | ||||| | |||||||| ||| |||||||||||||| || ||| | Sbjct 13379 CCAGCGAAGATCAATCTTTGTTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATCTTGGCT 13438 Query 15097 TTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGA 15156 || ||| |||| || || || | ||| || || || || |||||||| || |||| | Sbjct 13439 TTGACATTTTCGATGGTGTCAGAAGCTTCGACTTCCAAAGTGATGGTTTTTCCGGTCAAA 13498 Query 15157 GTTTTTACAAAAATTTGCAT 15176 ||||| || || |||||||| Sbjct 13499 GTTTTGACGAAGATTTGCAT 13518 >seq30935 Length=6295 Score = 105 bits (116), Expect = 5e-18 Identities = 159/226 (70%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| || |||||||| || || ||||| |||||||| ||| ||| | | | || || Sbjct 1477 AACCAAGTGAAGGGTCGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGTCCATCCTC 1418 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | |||||| || ||| | ||||| | ||||| || ||| |||||||||||||| Sbjct 1417 GAGTTGTTTTCCGGCGAAGATCAATCTTTGTTGATCTGGTGGGATTCCTTCCTTGTCTTG 1358 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 || ||| ||| ||| |||| || || || || || || | |||||| || || Sbjct 1357 GATCTTGGCTTTGACATTTTCGATGGTGTCCGAGGCCTCGACTTCGAGGGTAATTGTCTT 1298 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAATAAATTTT 15192 ||| |||||||| || || || |||||||| ||||| | | ||| Sbjct 1297 ACCCGTCAGAGTCTTGACGAAGATTTGCATGACTGAAAAATAGTTT 1252 >seq16010 Length=816 Score = 102 bits (112), Expect = 6e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| ||||| || || || || ||||| ||||||||||| ||| |||| | ||||| Sbjct 155 AACCAAATGGAGTGTTGATTCCTTTTGGATGTTGTAATCAGAAAGAGTTCTTCCATCTTC 214 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 |||||||| || || | ||||| | ||||| | ||| |||||||| || || Sbjct 215 CAATTGTTTTCCGGCAAAAATCAATCTTTGTTGATGTGGTGGGATTCCTTCGTTATCTTG 274 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 |||||| ||| ||| |||| || || ||| | ||| || || | || || ||||| Sbjct 275 AATTTTTGCTTTGACATTTTCAATTGTGTCGGAAGCTTCGACTTCGAGTGTGATAGTTTT 334 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || |||| ||||| || | ||||||||| Sbjct 335 TCCAGTCAATGTTTTGACGACGATTTGCATA 365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357245826560315