Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq30935 114 1e-20 seq13386 107 2e-18 >seq30935 Length=6295 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 ||||| || | || ||||| ||||| || ||||| ||| | || || ||| || Sbjct 1476 ACCAAGTGAAGGGTCGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGTCCATCCTCG 1417 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 || |||||||| ||| ||||||||| || ||||| || || || || |||||||| | Sbjct 1416 AGTTGTTTTCCGGCGAAGATCAATCTTTGTTGATCTGGTGGGATTCCTTCCTTGTCTTGG 1357 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 || || |||| | ||||| |||||||| ||||||||||| ||| | || || Sbjct 1356 ATCTTGGCTTTGACATTTTCGATGGTGTCCGAGGCCTCGACTTCGAGGGTAATTGTCTTA 1297 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 127117 || |||||||| || || || || |||||| || Sbjct 1296 CCCGTCAGAGTCTTGACGAAGATTTGCATGACT 1264 >seq13386 Length=19191 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||||||| | || || || ||||| || ||||| ||| Sbjct 11971 CCACCACGAAGGCGAAGAACCAAATGAAGAGTCGATTCCTTTTGGATGTTGTAGTCGGAG 12030 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || | |||||||| ||| |||| | || || ||||| || || Sbjct 12031 AGAGTGCGACCATCTTCCAATTGTTTTCCGGCGAAGATGAGACGTTGTTGATCTGGTGGG 12090 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || |||||||| ||| || ||||| | ||||| |||||| | |||||| Sbjct 12091 ATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTTTCGATGGTGTCAGAGGCTTCGACT 12150 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | ||||||||||| || || || || ||||| ||||| Sbjct 12151 TCCAAGGTGATGGTTTTGCCGGTGAGGGTCTTGACGAAAATTTGCAT 12197 Score = 100 bits (110), Expect = 3e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 126896 AATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGA 126955 |||| ||| ||||| || | || || || ||||||||||| ||||| | || | Sbjct 13020 AATCTCAAAACCAAGTGGAGTGTTGATTCCTTTTGAATATTATAATCCGAAAGGGTTCTG 13079 Query 126956 GAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCC 127015 ||| || | |||||||| ||| ||||||||| || || || || || || || || Sbjct 13080 CCATCTTCCAATTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGTGGAATTCCTTCT 13139 Query 127016 TTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTC 127075 ||||| ||| || ||||| | ||| | |||||| | | |||||||| | ||| Sbjct 13140 TTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCAGAAGCTTCGACTTCCAAGGTG 13199 Query 127076 ACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | ||||||||||| || || || || ||||| ||||| Sbjct 13200 ATAGTTTTGCCGGTGAGGGTCTTGACGAAAATTTGCAT 13237 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 ||||| || | || || ||||||||||| ||||| ||| | || | || || Sbjct 12217 ACCAAGTGGAGTGTTGATTCTTTTTGAATGTTGTAGTCGGAGAGGGTTCTTCCGTCTTCC 12276 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 | |||||||| ||| ||||||||| || || || || || || || || |||| | || Sbjct 12277 AATTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGTGGGATTCCTTCTTTGT-CTTG 12335 Query 127025 ATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 | ||| || |||| | ||||| ||| || | | ||| ||||| | ||| | || || Sbjct 12336 AATTTTAGCTTTGACATTTTCGATGGTATCAGAAGCCTCAACTTCAAGGGTGATGGTCTT 12395 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||||||| |||||| ||||| || ||||| Sbjct 12396 TCCGGTCAAAGTTTTGACAAAGATTTGCAT 12425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475301333358160