Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq13386 158 1e-33 seq16010 140 3e-28 seq30935 105 6e-18 >seq13386 Length=19191 Score = 158 bits (174), Expect = 1e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| | | ||||| || | || || |||||||||||||| ||||||||||| Sbjct 13008 ATTCCTCCTCTCAATCTCAAAACCAAGTGGAGTGTTGATTCCTTTTGAATATTATAATCC 13067 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | |||| | ||| |||||||||||||| ||| | ||||||| ||| ||||| || Sbjct 13068 GAAAGGGTTCTGCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGT 13127 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| |||||||| ||||| || || |||| ||| | |||||| |||| ||| Sbjct 13128 GGAATTCCTTCTTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCAGAAGCTTCG 13187 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | || | ||||||||||| || || || || ||||||||||| Sbjct 13188 ACTTCCAAGGTGATAGTTTTGCCGGTGAGGGTCTTGACGAAAATTTGCAT 13237 Score = 145 bits (160), Expect = 7e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| | ||| | | || | || || |||||||| ||||| || || || ||| Sbjct 12196 ATTCCTCCTCTGAGACGAAGAACCAAGTGGAGTGTTGATTCTTTTTGAATGTTGTAGTCG 12255 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || |||| | || |||||||||||||| ||| | ||||||| ||| ||||| || Sbjct 12256 GAGAGGGTTCTTCCGTCTTCCAATTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGT 12315 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || |||||||| ||||||||||| ||||| ||| | ||| || |||| ||| Sbjct 12316 GGGATTCCTTCTTTGTCTTGAATTTTAGCTTTGACATTTTCGATGGTATCAGAAGCCTCA 12375 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || | || || ||||| | |||||| ||||| |||||||| Sbjct 12376 ACTTCAAGGGTGATGGTCTTTCCGGTCAAAGTTTTGACAAAGATTTGCAT 12425 Score = 143 bits (158), Expect = 2e-29 Identities = 172/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| | | ||||| || | || || |||||||| |||||||| || || ||| Sbjct 13973 ATTCCTCCTCTCAATCTCAAAACCAAGTGAAGTGTTGATTCTTTTTGGATGTTGTAGTCG 14032 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || |||| | ||| |||||||||||||| ||| | ||||||| ||| ||||| || Sbjct 14033 GAGAGGGTTCTTCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGT 14092 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| ||||| || ||||| || || |||| || | || | ||| || |||| || Sbjct 14093 GGAATTCCTTCCTTGTCTTGGATCTTGGCCTTGA-CGTTCTCAATGGTATCAGAAGCTTC 14151 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||| | ||| | ||||| || || | |||||| ||||| |||||||| Sbjct 14152 GACTTCCAAAGTGATGGTTTTTCCAGTCAAAGTTTTGACAAAGATTTGCAT 14202 Score = 136 bits (150), Expect = 4e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| | ||| | | || | || || || || || |||||||| || || ||| Sbjct 13517 ATTCCTCCTCTGAGACGAAGGACCAAGTGGAGGGTGGACTCTTTTTGGATGTTGTAGTCG 13576 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| | ||| |||||||||||||| || | ||||||| ||| ||||| || Sbjct 13577 GAGAGAGTTCTTCCATCTTCCAATTGTTTTCCGGCAAAAATCAATCTTTGTTGGTCTGGT 13636 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| ||||||||||||||||||||| ||||| ||| | ||||| |||| || Sbjct 13637 GGAATTCCTTCTTTATCTTGAATTTTTGCTTTGACATTTTCAATTGTGTCCGAAGCTTCA 13696 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | || | ||||| || || | ||||| ||||| |||||||| Sbjct 13697 ACTTCCAATGTGATGGTTTTTCCAGTCAATGTTTTGACAAAGATTTGCAT 13746 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 45137 ATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTG 45196 ||| || || |||||||||||||| || || ||| || || | ||| |||||||| Sbjct 11994 ATGAAGAGTCGATTCCTTTTGGATGTTGTAGTCGGAGAGAGTGCGACCATCTTCCAATTG 12053 Query 45197 TTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTT 45256 |||||| ||| | || | ||||| || || || || || ||||| || ||||| || || Sbjct 12054 TTTTCCGGCGAAGATGAGACGTTGTTGATCTGGTGGGATTCCTTCCTTGTCTTGGATCTT 12113 Query 45257 TTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 |||| ||| | |||||| || | |||||||| | || | ||||||||||| Sbjct 12114 GGCCTTGACGTTTTCGATGGTGTCAGAGGCTTCGACTTCCAAGGTGATGGTTTTGCCGGT 12173 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 || || || || ||||||||||| Sbjct 12174 GAGGGTCTTGACGAAAATTTGCAT 12197 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCGTCCAATT 45195 || || || |||||||||||||| || ||||| ||| | | | ||| ||||||| Sbjct 13772 TGAAGGGTAGATTCCTTTTGGATGTTGTAATCA--GACAATGTGCGTCCATCTTCCAATT 13829 Query 45196 GTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTT 45255 ||||||| || | || | ||||| || || || || || ||||| || ||||| || | Sbjct 13830 GTTTTCCGGCAAAAATGAGACGTTGTTGATCTGGTGGGATTCCTTCCTTGTCTTGGATCT 13889 Query 45256 TTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGG 45315 | ||||| ||| | |||||| |||| || ||||| || || | ||||| || | Sbjct 13890 TAGCTTTGACATTTTCGATGGTGTCAGAAGCTTCAACTTCAAGTGTGATTGTTTTTCCAG 13949 Query 45316 TTAGAGTTTTTACAAAAATTTGCAT 45340 | || || || || || |||||||| Sbjct 13950 TGAGTGTCTTGACGAAGATTTGCAT 13974 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 45201 CCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGT 45260 |||||| | || | ||||| ||||| || ||||| |||||||| |||||||| || | Sbjct 14410 CCTGCGAAGATGAGACGTTGTTGGTCTGGTGGAATTCCTTCTTTGTCTTGAATCTTGGCT 14469 Query 45261 TTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGA 45320 || | ||| | ||| || |||| |||||||| || || | || || ||||| || Sbjct 14470 TTCACATTTTCGATGGTATCAGAAGCTTCGACTTCAAGTGTGATGGTCTTTCCGGTAAGT 14529 Query 45321 GTTTTTACAAAAATTTGCAT 45340 ||||| |||||||||||||| Sbjct 14530 GTTTTGACAAAAATTTGCAT 14549 >seq16010 Length=816 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| | ||| | | || | ||| || ||||||||||||||||| || ||||| Sbjct 135 ATTCCTCCTCTGAGACGAAGAACCAAATGGAGTGTTGATTCCTTTTGGATGTTGTAATCA 194 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| |||||||||||||| || | ||||||| ||| || | || Sbjct 195 GAAAGAGTTCTTCCATCTTCCAATTGTTTTCCGGCAAAAATCAATCTTTGTTGATGTGGT 254 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || ||||| ||||||||||||||| ||||| ||| | |||||||||| ||| Sbjct 255 GGGATTCCTTCGTTATCTTGAATTTTTGCTTTGACATTTTCAATTGTGTCGGAAGCTTCG 314 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||||| || | ||||| || || | ||||| || | |||||||| Sbjct 315 ACTTCGAGTGTGATAGTTTTTCCAGTCAATGTTTTGACGACGATTTGCAT 364 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269 ||||||| ||| || || || || || ||||| || || || || || ||||| | Sbjct 6 ATCAATCTTTGTTGATCTGGTGGGATTCCTTCCTTGTCCTGGATCTTGGCTTTGACATTT 65 Query 45270 TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACA 45329 || | ||||||||||| ||||||||||| || | ||||| ||||| || ||||| || Sbjct 66 TCAATGGTGTCGGAAGCTTCGACTTCGAGGGTGATGGTTTTTCCGGTAAGTGTTTTGACG 125 Query 45330 AAAATTTGCAT 45340 || ||||| || Sbjct 126 AAGATTTGAAT 136 >seq30935 Length=6295 Score = 105 bits (116), Expect = 6e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || || ||||||||||| || || ||| | || ||| || | |||| Sbjct 1470 TGAAGGGTCGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGTCCATCCTCGAGTTGT 1411 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 ||||| ||| | ||||||| ||| || || || || || ||||| || ||||| || || Sbjct 1410 TTTCCGGCGAAGATCAATCTTTGTTGATCTGGTGGGATTCCTTCCTTGTCTTGGATCTTG 1351 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 ||||| ||| | |||||| || | |||||||||||| |||| || || || || Sbjct 1350 GCTTTGACATTTTCGATGGTGTCCGAGGCCTCGACTTCGAGGGTAATTGTCTTACCCGTC 1291 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || || |||||||| Sbjct 1290 AGAGTCTTGACGAAGATTTGCAT 1268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451813590307640