Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_013055.1 Length=39896 Score E Sequences producing significant alignments: (Bits) Value seq16821 116 9e-22 >seq16821 Length=3270 Score = 116 bits (128), Expect = 9e-22 Identities = 192/272 (71%), Gaps = 4/272 (1%) Strand=Plus/Plus Query 8857 TCGCGCGCACTCAAACAAATTGCGAAGGAACTCGACGTTCCGATCATCGCGCTGTCGCAG 8916 || || || ||||||| | ||||||| ||||| || ||| ||||||||||||||||| Sbjct 1536 TCCCGTGCCCTCAAACTGCTCTCGAAGGAGCTCGATGTGCCGGTCATCGCGCTGTCGCAG 1595 Query 8917 CTTAATCGAGGGCTCGAGAATCGCCCAAACAAGCGGCCCGTCATGTCCGATCTGCGCGAG 8976 || || || | | |||| | ||| | ||||| ||||| || ||| ||||| || Sbjct 1596 CTGAACCGTGCGTCCGAGCAGCGCGCCGACAAGATGCCCGCGATCAGCGACCTGCGTGAA 1655 Query 8977 TCGGGTGCGATCGAGCAGGATGCCGACGTGATCCTCTTTATCTACCGCGATGAGGTCTAT 9036 |||||| || |||||||||| |||||| || | || | | ||||||| ||| Sbjct 1656 TCGGGTTCGCTCGAGCAGGACGCCGACATGGTGATCCTGCTGCACCGCGAGTCCAGCTAC 1715 Query 9037 AACCCCGACAGCGCAGATCG-CGGTACGGCCGAAATCATCATTGCGAAGCAGCGAAACGG 9095 | |||| | | || ||| |||||| |||| | || |||||||||||||| Sbjct 1716 GAGAAGGACA-ATCCGCGCGCCGGCGAGGCCGACCTCATTCTGGCCAAGCAGCGAAACGG 1774 Query 9096 GCCGATTGGCACCGT-ACGGCTCGCATTCCAG 9126 || | |||||||| |||| |||| |||||| Sbjct 1775 CCCCACCGGCACCGTCACGG-TCGCGTTCCAG 1805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127494771404364