Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq17384 87.8 2e-12 seq17567 82.4 9e-11 >seq17384 Length=2032 Score = 87.8 bits (96), Expect = 2e-12 Identities = 67/78 (86%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 31214 TCGGGGTGATAGGATTCGAACCTACGGCATCCGCCTCCCAAAGACGGCGCTCTA-CCAAG 31272 |||||| || ||||||||||||| || | ||| ||||||||| ||||||||| ||||| Sbjct 131 TCGGGGCGACAGGATTCGAACCTGCGACCTCCCGCTCCCAAAGCGGGCGCTCTAGCCAAG 72 Query 31273 CTGAGCTACACCCCGAAA 31290 ||||||||| |||||||| Sbjct 71 CTGAGCTACGCCCCGAAA 54 >seq17567 Length=2024 Score = 82.4 bits (90), Expect = 9e-11 Identities = 58/65 (89%), Gaps = 1/65 (2%) Strand=Plus/Plus Query 31937 GGACTTGAACCTCCACGTCGCAAGGACACTGGAACCTAAACCCAGCGCGTCTACCAATTC 31996 ||||||||||| |||||| ||| ||||||||||||||| ||||||||||| ||||||| Sbjct 126 GGACTTGAACCCTCACGTCCGAAG-ACACTGGAACCTAAATCCAGCGCGTCTGCCAATTC 184 Query 31997 CGCCA 32001 ||||| Sbjct 185 CGCCA 189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621863826422960