Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq31956 113 6e-20 >seq31956 Length=51777 Score = 113 bits (124), Expect = 6e-20 Identities = 286/430 (67%), Gaps = 10/430 (2%) Strand=Plus/Plus Query 115564 TAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTTG 115623 || ||||| || ||||| | |||| |||||| |||| | ||||||||| | | | | Sbjct 35165 TAATACATTCCAGTCTTCAATCCCTTCTTCCAACCATAGAAATGCATTGATGTGATCGCG 35224 Query 115624 GAGAGTGTTGGACTTTCCAT--GAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTC 115681 | |||| | |||| ||| | |||| |||||| |||||||| ||||| || Sbjct 35225 GCATAACTTGGTTTAGCCATATGAATA--TTCAAACTTTGTGATTGATCAATGAAAGCTC 35282 Query 115682 CCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGA 115741 | ||||| || ||||| ||||| | || || | |||||||| || ||| |||| | Sbjct 35283 CGCGATCTGCAGCCATCTCAATAATCTCTTTTTGCGATATTTCCCAAACTGTTTTGTACA 35342 Query 115742 GGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACCTGCCTTGACCA 115801 | || || ||| ||| || | | |||||||| || || ||| ||| || | | Sbjct 35343 ACTCTTTGATTTCAGTTGGAATTTGTTCAATATTTTGAATCGATCCAT-TGC--TGGCAA 35399 Query 115802 TGA---GATCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCACGAGGT 115858 | | ||| |||||||| | ||| | |||| | | ||||| || | | Sbjct 35400 TCAATCGATTTTTCATATCATCATCCCATAATCCAAGTTCAACCAAATCCTTCAACAAAT 35459 Query 115859 GCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGT 115918 | |||||||| || || || | | |||| |||||| |||| |||| Sbjct 35460 GTGGATTGACAATTTGGAAATCGCCAGACAAAACACGTCGAGAATAGATATTGGAAGTGT 35519 Query 115919 ATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTG 115978 |||| |||| |||||||||| || | |||||| |||||||| || || ||||| || | Sbjct 35520 ATGGTTCAATTGACTCATTGTTTCCGAGGATTTGAGCTGTGGAAGCAGTTGGCATTGGAG 35579 Query 115979 CCATGAGAAG 115988 |||||||||| Sbjct 35580 CCATGAGAAG 35589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613249841398440