Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq13386 141 2e-28 seq30935 109 1e-18 >seq13386 Length=19191 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | || |||||||| |||||||||| ||||||||| | | ||| Sbjct 11977 CGAAGGCGAAGAACCAAATGAAGAGTCGATTCCTTTTGGATGTTGTAGTCGGAGAGAGTG 12036 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||||| || |||||||||||||||||||| || || || || |||||| Sbjct 12037 CGACCATCTTCCAATTGTTTTCCGGCGAAGATGAGACGTTGTTGATCTGGTGGGATTCCT 12096 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || ||||| ||| ||| ||||| |||||| | | ||| || ||||| Sbjct 12097 TCCTTGTCTTGGATCTTGGCCTTGACGTTTTCGATGGTGTCAGAGGCTTCGACTTCCAAG 12156 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || ||||| || || || |||||||| Sbjct 12157 GTGATGGTTTTGCCGGTGAGGGTCTTGACGAAAATTTG 12194 Score = 123 bits (136), Expect = 6e-23 Identities = 155/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | |||||| || ||||| ||||||| ||||||||| | | ||| ||||||||| Sbjct 13535 AGGACCAAGTGGAGGGTGGACTCTTTTTGGATGTTGTAGTCGGAGAGAGTTCTTCCATCT 13594 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| || |||||||| || || | | || ||||| || |||||||||| || Sbjct 13595 TCCAATTGTTTTCCGGCAAAAATCAATCTTTGTTGGTCTGGTGGAATTCCTTCTTTATCT 13654 Query 199538 TGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||||| |||||| || || ||| | ||||| | | ||| || ||||| ||||| || Sbjct 13655 TGAAT-TTTTGCTTTGACATTTTCAATTGTGTCCGAAGCTTCAACTTCCAATGTGATGGT 13713 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | ||||| ||||| ||||| Sbjct 13714 TTTTCCAGTCAATGTTTTGACAAAGATTTG 13743 Score = 114 bits (126), Expect = 3e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | ||| || || || |||||||||| |||||| |||| ||| || Sbjct 13754 CGAAGACGGAGAACCAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAATCAGACAATGTG 13813 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||||||||| || |||||||| || |||||||| || || || || |||||| Sbjct 13814 CGTCCATCTTCCAATTGTTTTCCGGCAAAAATGAGACGTTGTTGATCTGGTGGGATTCCT 13873 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || ||||| || || ||||| |||||| | | ||| || || | Sbjct 13874 TCCTTGTCTTGGATCTTAGCTTTGACATTTTCGATGGTGTCAGAAGCTTCAACTTCAAGT 13933 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || ||||| || || || || ||||| Sbjct 13934 GTGATTGTTTTTCCAGTGAGTGTCTTGACGAAGATTTG 13971 Score = 114 bits (126), Expect = 3e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||||| || | ||| || || || || ||||||| ||||||||| | | || ||||| Sbjct 13987 TCTCAAAACCAAGTGAAGTGTTGATTCTTTTTGGATGTTGTAGTCGGAGAGGGTTCTTCC 14046 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 |||||||| || |||||||||||||| | | || ||||| || ||||||||| Sbjct 14047 ATCTTCCAATTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGTGGAATTCCTTCCTT 14106 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 || || ||||| ||| ||| || | ||| || | | ||| || ||||| ||||| Sbjct 14107 GTCTTGGATCTTGGCCTTGACGTTCTCAATGGTATCAGAAGCTTCGACTTCCAAAGTGAT 14166 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || | |||||| ||||| ||||| Sbjct 14167 GGTTTTTCCAGTCAAAGTTTTGACAAAGATTTG 14199 Score = 109 bits (120), Expect = 1e-18 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||||| || | |||||| || || |||||||| | || || || | | || || || Sbjct 13022 TCTCAAAACCAAGTGGAGTGTTGATTCCTTTTGAATATTATAATCCGAAAGGGTTCTGCC 13081 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 |||||||| || |||||||||||||| | | || ||||| || |||||||||| Sbjct 13082 ATCTTCCAATTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGTGGAATTCCTTCTTT 13141 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 || || ||||| ||| || ||| | |||||| | | ||| || ||||| ||||| Sbjct 13142 GTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCAGAAGCTTCGACTTCCAAGGTGAT 13201 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || ||||| || || || |||||||| Sbjct 13202 AGTTTTGCCGGTGAGGGTCTTGACGAAAATTTG 13234 Score = 102 bits (112), Expect = 2e-16 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | |||||| || || || ||||| | ||||||||| | | || ||||| ||| Sbjct 12214 AGAACCAAGTGGAGTGTTGATTCTTTTTGAATGTTGTAGTCGGAGAGGGTTCTTCCGTCT 12273 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| || |||||||||||||| | | || ||||| || ||||||||| || Sbjct 12274 TCCAATTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGTGGGATTCCTTCTTTGTCT 12333 Query 199538 TGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||||| ||| || || || ||||| ||| || | | || || || | ||||| || Sbjct 12334 TGAAT-TTTAGCTTTGACATTTTCGATGGTATCAGAAGCCTCAACTTCAAGGGTGATGGT 12392 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || | |||||| ||||| ||||| Sbjct 12393 CTTTCCGGTCAAAGTTTTGACAAAGATTTG 12422 Score = 91.5 bits (100), Expect = 3e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 200930 AAAAACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACG 200989 ||| | | |||||||||||||| || |||||||||||||| || | |||| |||||| Sbjct 14081 AAAGATTGATCTTCGCCGGAAAACAATTGGAAGATGGAAGAACCCTCTCCGACTACAACA 14022 Query 200990 TCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGA 201024 |||| ||||| || || |||||| | ||||||||| Sbjct 14021 TCCAAAAAGAATCAACACTTCACTTGGTTTTGAGA 13987 Score = 89.7 bits (98), Expect = 1e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 199490 CCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC 199549 || |||||||||||||| || ||||| || |||||||||| || |||||||| Sbjct 14410 CCTGCGAAGATGAGACGTTGTTGGTCTGGTGGAATTCCTTCTTTGTCTTGAATCTTGGCT 14469 Query 199550 TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGA 199609 ||||| ||||| ||| || | | ||| || || | ||||| ||||| || || || Sbjct 14470 TTCACATTTTCGATGGTATCAGAAGCTTCGACTTCAAGTGTGATGGTCTTTCCGGTAAGT 14529 Query 199610 GTTTTCACAAAAATTTG 199626 ||||| ||||||||||| Sbjct 14530 GTTTTGACAAAAATTTG 14546 >seq30935 Length=6295 Score = 109 bits (120), Expect = 1e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | ||| || |||||||||||||||| ||||||||| | | ||| Sbjct 1488 CGAAGACGGAGAACCAAGTGAAGGGTCGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTA 1429 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||| || || || |||||||||||||| | | || || || || |||||| Sbjct 1428 CGTCCATCCTCGAGTTGTTTTCCGGCGAAGATCAATCTTTGTTGATCTGGTGGGATTCCT 1369 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || ||||| || || ||||| |||||| | | || || || | Sbjct 1368 TCCTTGTCTTGGATCTTGGCTTTGACATTTTCGATGGTGTCCGAGGCCTCGACTTCGAGG 1309 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||||||||| ||||| || || || ||||| Sbjct 1308 GTAATTGTCTTACCCGTCAGAGTCTTGACGAAGATTTG 1271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178414693553453