Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq13386 105 8e-18 seq30935 86.0 7e-12 >seq13386 Length=19191 Score = 105 bits (116), Expect = 8e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| || | ||| |||| || | ||| || |||||||| ||||||||||| Sbjct 13976 CCTCCTCTCAATCTCAAAACCAAGTGAAGTGTTGATTCTTTTTGGATGTTGTAGTCGGAG 14035 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || | | || || | || || |||||||| ||||| | || ||||| | || Sbjct 14036 AGGGTTCTTCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGTGGA 14095 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | |||||||| |||||| ||||| || | | || || | ||| || Sbjct 14096 ATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTATCAGAAGCTTCGACT 14155 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 |||| ||||||||||| || |||| ||||| ||||||||||||||| Sbjct 14156 TCCAAAGTGATGGTTTTTCCAGTCAAAGTTTTGACAAAGATTTGCATT 14203 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||||||||| ||||||||||| |||||||| | || || | || || |||||||| Sbjct 12007 TCCTTTTGGATGTTGTAGTCGGAGAGAGTGCGACCATCTTCCAATTGTTTTCCGGCGAAG 12066 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | || || || || | || | | |||||||| |||||| ||||| | Sbjct 12067 ATGAGACGTTGTTGATCTGGTGGGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTT 12126 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | ||||| | ||| || |||| |||||||||||||| || || || || || Sbjct 12127 TCGATGGTGTCAGAGGCTTCGACTTCCAAGGTGATGGTTTTGCCGGTGAGGGTCTTGACG 12186 Query 46583 AAGATTTGCATT 46594 || ||||||||| Sbjct 12187 AAAATTTGCATT 12198 >seq30935 Length=6295 Score = 86.0 bits (94), Expect = 7e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||||||||| ||||||||||| ||||| || | || ||||| || || |||||||| Sbjct 1459 CTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGTCCATCCTCGAGTTGTTTTCCGGCGAA 1400 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| | || || || | || | | |||||||| |||||| |||| | Sbjct 1399 GATCAATCTTTGTTGATCTGGTGGGATTCCTTCCTTGTCTTGGATCTTGGCTTTGACATT 1340 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | ||||| | || || || | || || || || |||||||| || || || Sbjct 1339 TTCGATGGTGTCCGAGGCCTCGACTTCGAGGGTAATTGTCTTACCCGTCAGAGTCTTGAC 1280 Query 46582 AAAGATTTGCAT 46593 ||||||||||| Sbjct 1279 GAAGATTTGCAT 1268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565001289556680