Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq13386 159 3e-34 seq30935 120 3e-22 seq16010 98.7 1e-15 >seq13386 Length=19191 Score = 159 bits (176), Expect = 3e-34 Identities = 167/217 (77%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| ||||| || || ||||| ||||||||||||||| | || ||||| ||| | Sbjct 12198 AATGCAAATTTTCGTCAAGACCCTCACCGGCAAAACCATCACCTTGGAAGTCGAAGCCTC 12139 Query 38303 CGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | | ||||| | || | || |||| ||||| || ||||| || | || | Sbjct 12138 TGACACCATCGAAAACG-TCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCAGATC 12080 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 |||| || ||||| | ||| || ||||| |||| || | ||||| ||| |||||||| Sbjct 12079 AACAACGTCTCATCTTCGCCGGAAAACAATTGGAAGATGGTCGCACTCTCTCCGACTACA 12020 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||||||||||| |||| || |||||||| || || Sbjct 12019 ACATCCAAAAGGAATCGACTCTTCATTTGGTTCTTCG 11983 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || ||||| | || || || ||||||||| | || || ||||| | Sbjct 12425 ATGCAAATCTTTGTCAAAACTTTGACCGGAAAGACCATCACCCTTGAAGTTGAGGCTTCT 12366 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | ||| | |||| ||||| | |||||||| ||||| || | |||||| Sbjct 12365 GATACCATCGAAAATGTCAAAGCTAAAATTCAAGACAAAGAAGGAATCCCACCAGACCAA 12306 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || | | || | ||| || ||||| |||| |||| | |||||| |||||||||| Sbjct 12305 CAAAGATTGATCTTCGCCGGAAAACAATTGGAAGACGGAAGAACCCTCTCCGACTACAAC 12246 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || ||||| ||| | || || || ||||| || ||| | ||||| || Sbjct 12245 ATTCAAAAAGAATCAACACTCCACTTGGTTCTTCGTCTCAGAGGAGG 12199 Score = 113 bits (124), Expect = 5e-20 Identities = 155/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| ||||| || || ||||| || ||||| ||||| | || || || || | Sbjct 13975 AATGCAAATCTTCGTCAAGACACTCACTGGAAAAACAATCACACTTGAAGTTGAAGCTTC 13916 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | ||| | |||| || |||| ||||| || ||||| || | || || Sbjct 13915 TGACACCATCGAAAATGTCAAAGCTAAGATCCAAGACAAGGAAGGAATCCCACCAGATCA 13856 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || ||||||| || || ||||| |||| || | ||||| | || ||||| Sbjct 13855 ACAACGTCTCATTTTTGCCGGAAAACAATTGGAAGATGGACGCACATTGTCTGATTACAA 13796 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||||||| | || || || ||||| || ||| Sbjct 13795 CATCCAAAAGGAATCTACCCTTCACTTGGTTCTCCGT 13759 Score = 113 bits (124), Expect = 5e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| || || ||||| | || || ||||||||||| | || ||||| || | Sbjct 14203 AATGCAAATCTTTGTCAAAACTTTGACTGGAAAAACCATCACTTTGGAAGTCGAAGCTTC 14144 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 || | | | | |||| | || | || |||| ||||| || |||||||| | |||| Sbjct 14143 TGATACCATTGAGAACG-TCAAGGCCAAGATCCAAGACAAGGAAGGAATTCCACCAGACC 14085 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 |||| | | || | ||| || ||||| |||| || | | |||||| |||||||| Sbjct 14084 AACAAAGATTGATCTTCGCCGGAAAACAATTGGAAGATGGAAGAACCCTCTCCGACTACA 14025 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||||| ||| | || || || ||||| || | |||||||| || Sbjct 14024 ACATCCAAAAAGAATCAACACTTCACTTGGTTTTGAGATTGAGAGGAGG 13976 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || ||||| | || || ||||||||||| | || || || || | Sbjct 13746 ATGCAAATCTTTGTCAAAACATTGACTGGAAAAACCATCACATTGGAAGTTGAAGCTTCG 13687 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | ||| | |||| |||||| | || ||||| |||||||| | |||||| Sbjct 13686 GACACAATTGAAAATGTCAAAGCAAAAATTCAAGATAAAGAAGGAATTCCACCAGACCAA 13627 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || | | |||| || || ||||| |||| || | | || ||| |||||||||| Sbjct 13626 CAAAGATTGATTTTTGCCGGAAAACAATTGGAAGATGGAAGAACTCTCTCCGACTACAAC 13567 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||| || | || || || ||||| || ||| | ||||| || Sbjct 13566 ATCCAAAAAGAGTCCACCCTCCACTTGGTCCTTCGTCTCAGAGGAGG 13520 >seq30935 Length=6295 Score = 120 bits (132), Expect = 3e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || || ||||| || || || ||| |||| ||||||||| | Sbjct 1268 ATGCAAATCTTCGTCAAGACTCTGACGGGTAAGACAATTACCCTCGAAGTCGAGGCCTCG 1327 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | ||| | |||| || |||| ||||| || ||||| || | || ||| Sbjct 1328 GACACCATCGAAAATGTCAAAGCCAAGATCCAAGACAAGGAAGGAATCCCACCAGATCAA 1387 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || | | || | ||| || ||||| || || || | || || || |||||||||| Sbjct 1388 CAAAGATTGATCTTCGCCGGAAAACAACTCGAGGATGGACGTACTCTTTCCGACTACAAC 1447 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||||| |||| || || ||||| || ||| Sbjct 1448 ATCCAAAAGGAGTCGACCCTTCACTTGGTTCTCCGT 1483 >seq16010 Length=816 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| |||| ||||| | || || ||||| ||||| |||| ||||| || || Sbjct 364 ATGCAAATCGTCGTCAAAACATTGACTGGAAAAACTATCACACTCGAAGTCGAAGCTTCC 305 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | ||| | |||| |||||| | || || || ||||| || | | ||| Sbjct 304 GACACAATTGAAAATGTCAAAGCAAAAATTCAAGATAACGAAGGAATCCCACCACATCAA 245 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || | | |||| || || ||||| |||| || | | || || || |||||| Sbjct 244 CAAAGATTGATTTTTGCCGGAAAACAATTGGAAGATGGAAGAACTCTTTCTGATTACAAC 185 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||||||| | || || |||||||| || ||| | ||||| || Sbjct 184 ATCCAAAAGGAATCAACACTCCATTTGGTTCTTCGTCTCAGAGGAGG 138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499962983762560