Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq31956 125 9e-24 >seq31956 Length=51777 Score = 125 bits (138), Expect = 9e-24 Identities = 290/430 (67%), Gaps = 8/430 (2%) Strand=Plus/Minus Query 112901 TCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATG 112960 |||| | ||||| ||||||||||| || ||||| || |||||| | || || ||||| | Sbjct 35590 TCTTCTCATGGCTCCAATGCCAACTGCTTCCACAGCTCAAATCCTCGGAAACAATGAGTC 35531 Query 112961 CTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGAT 113020 ||||||| ||||| | || |||||| || | | | || || || || Sbjct 35530 AATTGAACCATACACTTCCAATATCTATTCTCGACGTGTTTTGTCTGGCGATTTCCAAAT 35471 Query 113021 TGTCAACAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAA 113080 |||||| ||| | || | || | || |||| | ||| | |||||||| Sbjct 35470 TGTCAATCCACATTTGTTGAAGGATTTGGTTGAACTTGGATTATGGGATGATGATATGAA 35411 Query 113081 GGATCTCATGGT-GAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAGATGAAA 113139 ||| || | | ||| ||| || ||||||||||||| | |||||| ||||| Sbjct 35410 AAATCGATTGATTGCCAGCAA-TGGATCGATTCAAAATATTGAACAAATTCCAACTGAAA 35352 Query 113140 TTAAGAAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCG 113199 | || |||||||| |||||||||||||| | || || | ||||| ||||| | Sbjct 35351 TCAAAGAGTTGTACAAAACAGTTTGGGAAATATCGCAAAAAGAGATTATTGAGATGGCTG 35292 Query 113200 CAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTATTC--ATGGAAAGTCC 113257 ||||||| || |||||||||||| |||||| |||| ||||| |||| | || Sbjct 35291 CAGATCGCGGAGCTTTCATTGATCAATCACAAAGTTTGAA--TATTCATATGGCTAAACC 35234 Query 113258 AA-CGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGG 113316 || ||| || | || | || ||||| | || ||||||||||||| | || || | Sbjct 35233 AAGTTATG-CCGCGATCACATCAATGCATTTCTATGGTTGGAAGAAGGGATTGAAGACTG 35175 Query 113317 GGATGTATTA 113326 | |||||||| Sbjct 35174 GAATGTATTA 35165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620482006322480