Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq31956 91.5 2e-13 seq31313 91.5 2e-13 >seq31956 Length=51777 Score = 91.5 bits (100), Expect = 2e-13 Identities = 226/335 (67%), Gaps = 10/335 (3%) Strand=Plus/Plus Query 109510 TGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTA 109569 || || ||||| ||||| || ||||| || ||||| || || || | ||||| || | Sbjct 35261 TGTGATTGATCAATGAAAGCTCCGCGATCTGCAGCCATCTCAATAAT-CTCTTTTTGCGA 35319 Query 109570 -ATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTG 109628 |||||||| || || |||||||| | ||||| ||| ||||| | | || ||||| Sbjct 35320 TATTTCCCAAACTGTTTTGTACAACTCTTTGATTTCAGTTGGAATTTGTTCAATATTTTG 35379 Query 109629 AATAGAGCCA---CCAGCCTTCACCATGAGATCCTTCATCTCTTTCGACCAGAGACCGAC 109685 ||| || ||| | || ||| || ||| ||||| || | ||| | || | Sbjct 35380 AATCGATCCATTGCTGGCAATCA--ATC-GATTTTTCATATCATCATCCCATAATCCAAG 35436 Query 109686 CTTTTTGAGATCGT-CAACAAGATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGC 109744 | | ||| | |||||| ||| ||||| | || || |||| | | Sbjct 35437 TTCAACCAAATCCTTCAACAA-ATGTGGATTGACAATTTGGAAATCGCCAGACAAAACAC 35495 Query 109745 GTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTG 109804 |||| ||||| || | ||||| ||||| | |||||||||| || |||||||| | Sbjct 35496 GTCGAGAATAGATATTGGAAGTGTATGGTTCAATTGACTCATTGTTTCCGAGGATTTGAG 35555 Query 109805 CAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGA 109839 | |||||||| || ||||| ||||||||||||||| Sbjct 35556 CTGTGGAAGCAGTTGGCATTGGAGCCATGAGAAGA 35590 >seq31313 Length=25367 Score = 91.5 bits (100), Expect = 2e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 168430 TTACCACGGAGTGGAAATACCCCATAATGATCTCTACCCACGACGGAGAGACCAGCGACA 168489 |||||||| ||||||||||| ||||| | |||||| || || || | | ||||| || Sbjct 20810 TTACCACGAAGTGGAAATACTCCATATTTATCTCTTCCAACAACTGCTAAACCAGAAACT 20751 Query 168490 GCGAGAGTTTTCGCTGAATCACCCTCTGTCACGATGAGTGTACACTTTCCAGACTGTGCC 168549 || || ||||| || ||||| ||||| || | ||| | |||||| | | ||| | | Sbjct 20750 GCAAGTGTTTTTGCAGAATCTCCCTCAGTAAGGATCAATGTACATTGTTGAGAGTTTTTG 20691 Query 168550 GTACCAGCTTTGTTCGCATCGTCCAATTTGGGGATACC 168587 || ||||| | ||| ||||| || | ||| || || || Sbjct 20690 GTTCCAGCATCGTTTGCATCTTCGAGTTTTGGAATTCC 20653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588728931930200