Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq32419 136 5e-27 >seq32419 Length=45452 Score = 136 bits (150), Expect = 5e-27 Identities = 282/417 (68%), Gaps = 12/417 (3%) Strand=Plus/Plus Query 154719 TGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCTAGTGCTGTCATGGCAGGGATG 154778 ||| |||| ||| || || ||||| || ||||| ||| ||| |||||| ||| Sbjct 33951 TGTCTGATTCCAACCTCTGCTCATGGCACAAATCCAGCTTCAGCTCATATGGCAAATATG 34010 Query 154779 AAAGTTGTAGGTGTCAAGTGTGATGATGATGGTAACATAGACATCAAAGATCTAGAGAAG 154838 ||||| || | |||| | | ||| | | ||||| || | || ||||| | | Sbjct 34011 AAAGTAGTTGTTGTCGATTCGGATCAACACGGTAATATCAATTTCCGTGATCTCCAACAA 34070 Query 154839 AAAGCAATCATGAATACATTTGAACTGTCATGT----ATTATGATTACATACCCATCTAC 154894 ||||| || ||||| ||| || || |||||| | || || || || || Sbjct 34071 AAAGCCGA----AAAACATTCGAAAAATCTTGCCGCAATTATGGTAACTTATCCCTCAAC 34126 Query 154895 ACATGGTGTATTTGAAACTAACATTAGACAGATATGTAAGATCGTTCATGACAATGGTGG 154954 ||||||||||| ||| | || | | | | ||| | | |||||| | | || || Sbjct 34127 TCATGGTGTATTCGAATCATCGATCAAAGATGTTTGTGATCTTGTTCATCAACACGGCGG 34186 Query 154955 TCAGGTATATCTTGATGGAGCAAATCTAAATGCACAGGTAGGACTAGCAAAACCATGTGA 155014 || || ||||| |||||||||||| | |||||||| || || | ||| | || Sbjct 34187 ACAAGTTTATCTCGATGGAGCAAATATGAATGCACAAGTTGGTTTGTGTCGTCCAGGAGA 34246 Query 155015 GTATGGTGCAGATGTATGTCATCTAAACTTACATAAAACATTCTGTATTCCACATGGAGG 155074 ||||| ||||||| ||||| || || |||||||||||||||||||||||||| || Sbjct 34247 TTATGGAAGTGATGTATCACATCTCAATTTGCATAAAACATTCTGTATTCCACATGGTGG 34306 Query 155075 TGGAGGTCCTGGCGTAGGTCCTATAGGTGTAGCAAA--ACATCTCACACCATTTGTA 155129 || || ||||| || || || || || || |||| |||||| |||||||| || Sbjct 34307 AGGTGGCCCTGGAGTTGGACCAATTGGAGT--CAAATCACATCTTGCACCATTTTTA 34361 Score = 86.0 bits (94), Expect = 7e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 153906 GCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAGCAACCAGTAACATCTGCACA 153965 || || || ||| | || || ||||| | ||||||||||| || ||||| || || || Sbjct 31752 GCTCTTCAAACTCGCGAACAACATATTCGAAGAGACAAAGCTACAAGTAATATTTGTACT 31811 Query 153966 GCTCAGGCACTGCTGGCTAATATGTCTGGATTCTATGCAGCATATCATGG 154015 ||||| ||||| ||||||||||| ||| | | ||||||| |||||||| Sbjct 31812 GCTCAAGCACTTTTGGCTAATATGGCTGCAATGTATGCAGTTTATCATGG 31861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578969827470560