Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq32419 154 2e-32 >seq32419 Length=45452 Score = 154 bits (170), Expect = 2e-32 Identities = 286/417 (69%), Gaps = 12/417 (3%) Strand=Plus/Plus Query 159394 TGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCATCAGCAGTGATGGCAGGGATG 159453 ||| |||| ||| || || ||||| || ||||| || ||||| |||||| ||| Sbjct 33951 TGTCTGATTCCAACCTCTGCTCATGGCACAAATCCAGCTTCAGCTCATATGGCAAATATG 34010 Query 159454 AAAGTTGTAGGTGTCAAGTGTGATGATGATGGCAACATAGACATCAAAGATCTAGAGAAG 159513 ||||| || | |||| | | ||| | | || || || | || ||||| | | Sbjct 34011 AAAGTAGTTGTTGTCGATTCGGATCAACACGGTAATATCAATTTCCGTGATCTCCAACAA 34070 Query 159514 AAAGCAATCATGAATACATTTGAACTGTCATGT----ATTATGATTACATATCCATCTAC 159569 ||||| || ||||| ||| || || |||||| | || ||||| || || Sbjct 34071 AAAGCCGA----AAAACATTCGAAAAATCTTGCCGCAATTATGGTAACTTATCCCTCAAC 34126 Query 159570 ACATGGTGTATTTGAAACAAACATCAGACAGATATGTAAGATTGTTCATGAGAATGGTGG 159629 ||||||||||| ||| || |||| | | | ||| | |||||||| | | || || Sbjct 34127 TCATGGTGTATTCGAATCATCGATCAAAGATGTTTGTGATCTTGTTCATCAACACGGCGG 34186 Query 159630 TCAGGTATATCTTGATGGTGCAAATCTAAATGCACAGGTAGGTCTAGCAAAACCATGTGA 159689 || || ||||| ||||| |||||| | |||||||| || ||| | ||| | || Sbjct 34187 ACAAGTTTATCTCGATGGAGCAAATATGAATGCACAAGTTGGTTTGTGTCGTCCAGGAGA 34246 Query 159690 CTATGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGG 159749 ||||| ||||||| ||||| || || ||||| |||||||||||||||||||| || Sbjct 34247 TTATGGAAGTGATGTATCACATCTCAATTTGCATAAAACATTCTGTATTCCACATGGTGG 34306 Query 159750 TGGAGGTCCTGGCGTAGGTCCTATTGGTGTAGCAAA--ACATCTCACACCATTTGTA 159804 || || ||||| || || || ||||| || |||| |||||| |||||||| || Sbjct 34307 AGGTGGCCCTGGAGTTGGACCAATTGGAGT--CAAATCACATCTTGCACCATTTTTA 34361 Score = 86.0 bits (94), Expect = 7e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 158581 GCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAAGCAACCAGTAACATCTGCACA 158640 || || || ||| | || || ||||| ||||||||||||| || ||||| || || || Sbjct 31752 GCTCTTCAAACTCGCGAACAACATATTCGAAGAGACAAAGCTACAAGTAATATTTGTACT 31811 Query 158641 GCACAAGCACTGCTGGCTAATATGTCTGGGTTCTATGCAGCATATCATGG 158690 || |||||||| ||||||||||| ||| | ||||||| |||||||| Sbjct 31812 GCTCAAGCACTTTTGGCTAATATGGCTGCAATGTATGCAGTTTATCATGG 31861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587804519872240