Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq13386 187 6e-42 seq30935 158 3e-33 seq16010 143 6e-29 >seq13386 Length=19191 Score = 187 bits (206), Expect = 6e-42 Identities = 175/223 (78%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||||||||| | |||||| || || |||||||| || ||||| |||| || || Sbjct 13981 TCTCAATCTCAAAACCAAGTGAAGTGTTGATTCTTTTTGGATGTTGTAGTCGGAGAGGGT 14040 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| |||||||| | || || || |||||||| | || |||||||||||| ||||| || Sbjct 14041 TCTTCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGTGGAATTCC 14100 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| |||||||| || || |||||||||||||||||| || ||| ||| ||||| | Sbjct 14101 TTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTATCAGAAGCTTCGACTTCCAA 14160 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || | || ||||| ||||||||||| || || | ||||||| Sbjct 14161 AGTGATGGTTTTTCCAGTCAAAGTTTTGACAAAGATTTGCATT 14203 Score = 176 bits (194), Expect = 1e-38 Identities = 172/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | | ||| | ||| || || || ||||||||||| ||||| |||| || || Sbjct 12204 TCTGAGACGAAGAACCAAGTGGAGTGTTGATTCTTTTTGAATGTTGTAGTCGGAGAGGGT 12263 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| || ||||| | || || || |||||||| | || |||||||||||| || || || Sbjct 12264 TCTTCCGTCTTCCAATTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGTGGGATTCC 12323 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 |||||||||||||||||| ||||| || || ||||| || ||| || |||||||| Sbjct 12324 TTCTTTGTCTTGAATTTTAGCTTTGACATTTTCGATGGTATCAGAAGCCTCAACTTCAAG 12383 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| | |||||||| ||||||||||| || || | |||||| Sbjct 12384 GGTGATGGTCTTTCCGGTCAAAGTTTTGACAAAGATTTGCAT 12425 Score = 170 bits (188), Expect = 4e-37 Identities = 171/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||||||||| | ||| || || || || ||||||||||| ||||| | ||| || Sbjct 13016 TCTCAATCTCAAAACCAAGTGGAGTGTTGATTCCTTTTGAATATTATAATCCGAAAGGGT 13075 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| |||||||| | || || || |||||||| | || |||||||||||| ||||| || Sbjct 13076 TCTGCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGTGGAATTCC 13135 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 |||||||||||| || || |||||| || ||||||||||| ||| ||| ||||| | Sbjct 13136 TTCTTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCAGAAGCTTCGACTTCCAA 13195 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| | || || || || | || || ||||| | |||||| Sbjct 13196 GGTGATAGTTTTGCCGGTGAGGGTCTTGACGAAAATTTGCAT 13237 Score = 170 bits (188), Expect = 4e-37 Identities = 171/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | | || | ||| || |||||||||||||| || ||||| |||| ||||| Sbjct 13525 TCTGAGACGAAGGACCAAGTGGAGGGTGGACTCTTTTTGGATGTTGTAGTCGGAGAGAGT 13584 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| |||||||| | || || || || || || | || |||||||||||| ||||| || Sbjct 13585 TCTTCCATCTTCCAATTGTTTTCCGGCAAAAATCAATCTTTGTTGGTCTGGTGGAATTCC 13644 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 |||||| |||||||||||| ||||| || ||||| ||||||||| ||| ||||| | Sbjct 13645 TTCTTTATCTTGAATTTTTGCTTTGACATTTTCAATTGTGTCCGAAGCTTCAACTTCCAA 13704 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | || ||||| ||||| ||||| || || | |||||| Sbjct 13705 TGTGATGGTTTTTCCAGTCAATGTTTTGACAAAGATTTGCAT 13746 Score = 120 bits (132), Expect = 7e-22 Identities = 111/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 195000 ACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTG 195059 |||||||||||| || |||||||||||||| ||||| ||||||||||||||||| || Sbjct 14409 ACCTGCGAAGATGAGACGTTGTTGGTCTGGTGGAATTCCTTCTTTGTCTTGAATCTTGGC 14468 Query 195060 CTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAA 195119 || || || || ||||| || ||| ||| |||||||| || | |||||||| || | Sbjct 14469 TTTCACATTTTCGATGGTATCAGAAGCTTCGACTTCAAGTGTGATGGTCTTTCCGGTAAG 14528 Query 195120 AGTTTTTACGAACACTTGCAT 195140 ||||| || || | |||||| Sbjct 14529 TGTTTTGACAAAAATTTGCAT 14549 Score = 113 bits (124), Expect = 1e-19 Identities = 112/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || ||| |||||||| | || |||||||||||| || || ||||| |||||||| || || Sbjct 13375 CTCACCAGCGAAGATCAATCTTTGTTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATCTT 13434 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||||| || || |||||||| ||| ||| ||||| | || | || ||||| || Sbjct 13435 GGCTTTGACATTTTCGATGGTGTCAGAAGCTTCGACTTCCAAAGTGATGGTTTTTCCGGT 13494 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 ||||||||| ||||| | ||||||| Sbjct 13495 CAAAGTTTTGACGAAGATTTGCATT 13519 Score = 105 bits (116), Expect = 1e-17 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058 |||| || ||||| | || |||||||||||| ||||| ||||| |||||||| || || Sbjct 12566 TACCGGCAAAGATCAATCTTTGTTGGTCTGGTGGAATTCCTTCCTTGTCTTGGATCTTGG 12625 Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 |||||||| || |||||||| ||| ||| ||||| | || | || ||||| || | Sbjct 12626 CTTTGACGTTTTCGATGGTGTCAGAAGCTTCAACTTCCAATGTGATGGTTTTTCCGGTGA 12685 Query 195119 AAGTTTTTACGAACACTTGCATT 195141 ||| || ||||| | ||||||| Sbjct 12686 GAGTCTTGACGAAGATTTGCATT 12708 >seq30935 Length=6295 Score = 158 bits (174), Expect = 3e-33 Identities = 161/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | |||||| || ||||| ||||| || ||||| |||| |||||| | ||||| || Sbjct 1477 AACCAAGTGAAGGGTCGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGTCCATCCTC 1418 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||| || || || |||||||| | || |||||| ||||| || || ||||| |||||||| Sbjct 1417 GAGTTGTTTTCCGGCGAAGATCAATCTTTGTTGATCTGGTGGGATTCCTTCCTTGTCTTG 1358 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || || ||||| || || ||||||||||| || ||||| ||||||| ||||| Sbjct 1357 GATCTTGGCTTTGACATTTTCGATGGTGTCCGAGGCCTCGACTTCGAGGGTAATTGTCTT 1298 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| ||| || ||||| | |||||| Sbjct 1297 ACCCGTCAGAGTCTTGACGAAGATTTGCAT 1268 >seq16010 Length=816 Score = 143 bits (158), Expect = 6e-29 Identities = 165/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | | ||| | || || || || || ||||| || |||||||| | |||||| Sbjct 143 TCTGAGACGAAGAACCAAATGGAGTGTTGATTCCTTTTGGATGTTGTAATCAGAAAGAGT 202 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| |||||||| | || || || || || || | || |||||| | ||| || || || Sbjct 203 TCTTCCATCTTCCAATTGTTTTCCGGCAAAAATCAATCTTTGTTGATGTGGTGGGATTCC 262 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| || |||||||||||| ||||| || ||||| ||||| ||| ||| ||||| || Sbjct 263 TTCGTTATCTTGAATTTTTGCTTTGACATTTTCAATTGTGTCGGAAGCTTCGACTTCGAG 322 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | || ||||| ||||| ||||| |||| | |||||| Sbjct 323 TGTGATAGTTTTTCCAGTCAATGTTTTGACGACGATTTGCAT 364 Score = 89.7 bits (98), Expect = 1e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 195005 CGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGA 195064 |||| || | || |||||| ||||| || || ||||| ||||| || || || |||| Sbjct 1 CGAAAATCAATCTTTGTTGATCTGGTGGGATTCCTTCCTTGTCCTGGATCTTGGCTTTGA 60 Query 195065 CGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTT 195124 | || ||||||||||| ||| ||| ||||| ||||| | || ||||| || | |||| Sbjct 61 CATTTTCAATGGTGTCGGAAGCTTCGACTTCGAGGGTGATGGTTTTTCCGGTAAGTGTTT 120 Query 195125 TTACGAACACTTGCATT 195141 | ||||| | ||| ||| Sbjct 121 TGACGAAGATTTGAATT 137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109004550995753