Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq13386 138 7e-28 seq30935 109 4e-19 >seq13386 Length=19191 Score = 138 bits (152), Expect = 7e-28 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||| ||||| |||||||||||||||| ||| |||||| || ||||| ||||| | Sbjct 13974 TTCCTCCTCTCAATCTCAAAACCAAGTGAAGTGTTGATTCTTTTTGGATGTTGTAGTCGG 14033 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 | ||| ||| | |||| |||| ||||||||||| || || | || ||| |||||| | | Sbjct 14034 AGAGGGTTCTTCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGTG 14093 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | || |||||||| ||||| |||||| | || | ||| || || | Sbjct 14094 GAATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTATCAGAAGCTTCGA 14153 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | || ||||||||||| || | ||| || |||||||| ||||| Sbjct 14154 CTTCCAAAGTGATGGTTTTTCCAGTCAAAGTTTTGACAAAGATTTGCAT 14202 Score = 127 bits (140), Expect = 1e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||| ||||| |||||||||||||| | ||| ||| || ||||| ||||| |||| Sbjct 13009 TTCCTCCTCTCAATCTCAAAACCAAGTGGAGTGTTGATTCCTTTTGAATATTATAATCCG 13068 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 ||||| ||| |||| |||| ||||||||||| || || | || ||| |||||| | | Sbjct 13069 AAAGGGTTCTGCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGTG 13128 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | || || ||||| ||||| ||||| | | || | ||| || || | Sbjct 13129 GAATTCCTTCTTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCAGAAGCTTCGA 13188 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | || | ||| || ||||| || ||||| ||||| || || || |||||| Sbjct 13189 CTTCCAAGGTGATAGTTTTGCCGGTGAGGGTCTTGACGAAAATTTGCATA 13238 Score = 122 bits (134), Expect = 6e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||| || | | | ||||||||| | ||| |||||| |||||||| ||||| | Sbjct 12197 TTCCTCCTCTGAGACGAAGAACCAAGTGGAGTGTTGATTCTTTTTGAATGTTGTAGTCGG 12256 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 | ||| ||| | | || |||| ||||||||||| || || | || ||| |||||| | | Sbjct 12257 AGAGGGTTCTTCCGTCTTCCAATTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGTG 12316 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | || || ||||| ||| || |||||| | | || | ||| ||||||| Sbjct 12317 GGATTCCTTCTTTGTCTTGAATTTTAGCTTTGACATTTTCGATGGTATCAGAAGCCTCAA 12376 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | || | ||| ||||| ||||| || | ||| || |||||||| |||||| Sbjct 12377 CTTCAAGGGTGATGGTCTTTCCGGTCAAAGTTTTGACAAAGATTTGCATA 12426 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||||| || ||| || || ||||| || || || | | ||| |||| || Sbjct 13765 AACCAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAATCAGACAATGTGCGTCCATCTTC 13824 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 || |||||||||||||| || || ||||| || ||| | || | || |||||||| Sbjct 13825 CAATTGTTTTCCGGCAAAAATGAGACGTTGTTGATCTGGTGGGATTCCTTCCTTGTCTTG 13884 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||||| |||||| | | || | ||| || ||||| || | || || ||||| Sbjct 13885 GATCTTAGCTTTGACATTTTCGATGGTGTCAGAAGCTTCAACTTCAAGTGTGATTGTTTT 13944 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||| ||||| ||||| || ||||| ||||| Sbjct 13945 TCCAGTGAGTGTCTTGACGAAGATTTGCAT 13974 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 |||||| |||| || ||| || || ||||| ||||| || || | || |||| || Sbjct 11988 AACCAAATGAAGAGTCGATTCCTTTTGGATGTTGTAGTCGGAGAGAGTGCGACCATCTTC 12047 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 || ||||||||||| || || || ||||| || ||| | || | || |||||||| Sbjct 12048 CAATTGTTTTCCGGCGAAGATGAGACGTTGTTGATCTGGTGGGATTCCTTCCTTGTCTTG 12107 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||||| |||||| | | || | ||| ||| || || || | ||| |||||||| Sbjct 12108 GATCTTGGCCTTGACGTTTTCGATGGTGTCAGAGGCTTCGACTTCCAAGGTGATGGTTTT 12167 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || ||||| ||||| || || || ||||| Sbjct 12168 GCCGGTGAGGGTCTTGACGAAAATTTGCAT 12197 Score = 95.1 bits (104), Expect = 8e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| ||||| || ||||| ||||| || || ||| | |||| ||| Sbjct 13538 ACCAAGTGGAGGGTGGACTCTTTTTGGATGTTGTAGTCGGAGAGAGTTCTTCCATCTTCC 13597 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | |||||||||||||| || | || ||| |||||| | || | || || || || | Sbjct 13598 AATTGTTTTCCGGCAAAAATCAATCTTTGTTGGTCTGGTGGAATTCCTTCTTTATCTTGA 13657 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 || || |||||| | | || | || || ||||| || | || ||||||||| Sbjct 13658 ATTTTTGCTTTGACATTTTCAATTGTGTCCGAAGCTTCAACTTCCAATGTGATGGTTTTT 13717 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || | || || |||||||| |||||| Sbjct 13718 CCAGTCAATGTTTTGACAAAGATTTGCATA 13747 Score = 82.4 bits (90), Expect = 5e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 34842 CCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGT 34901 |||||||| || | || ||| |||||| | || | || |||||||| ||||| | Sbjct 12568 CCGGCAAAGATCAATCTTTGTTGGTCTGGTGGAATTCCTTCCTTGTCTTGGATCTTGGCT 12627 Query 34902 TTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGA 34961 |||||| | | || | ||| || ||||| || | || ||||||||||| |||||| Sbjct 12628 TTGACGTTTTCGATGGTGTCAGAAGCTTCAACTTCCAATGTGATGGTTTTTCCGGTGAGA 12687 Query 34962 GTCTTCACAAAGATCTGCAT 34981 ||||| || ||||| ||||| Sbjct 12688 GTCTTGACGAAGATTTGCAT 12707 >seq30935 Length=6295 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||||| || || || || ||||| ||||| ||||| | ||| |||| || Sbjct 1477 AACCAAGTGAAGGGTCGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGTCCATCCTC 1418 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 || ||||||||||| || || | || ||| || ||| | || | || |||||||| Sbjct 1417 GAGTTGTTTTCCGGCGAAGATCAATCTTTGTTGATCTGGTGGGATTCCTTCCTTGTCTTG 1358 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||||| |||||| | | || | || |||||| || |||| ||| || || || Sbjct 1357 GATCTTGGCTTTGACATTTTCGATGGTGTCCGAGGCCTCGACTTCGAGGGTAATTGTCTT 1298 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||||| |||||||| || ||||| ||||| Sbjct 1297 ACCCGTCAGAGTCTTGACGAAGATTTGCAT 1268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324500824756152