Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_015780.1 Length=205791 Score E Sequences producing significant alignments: (Bits) Value seq29506 86.0 8e-12 seq33217 84.2 3e-11 >seq29506 Length=33488 Score = 86.0 bits (94), Expect = 8e-12 Identities = 175/253 (69%), Gaps = 14/253 (6%) Strand=Plus/Minus Query 126954 GGTCCAACATACTATCATCGTCTTAAACATATGGTTAAAGATAAAATGCATGCTAGAAGT 127013 |||||||| || ||||| ||||| ||||| ||||| | || ||||| ||| | || | Sbjct 22137 GGTCCAACCTATTATCAACGTCTCAAACACATGGTCGACGACAAAATCCATTCACGAGCT 22078 Query 127014 CATGGTC-AAGTAACAACATTACATCGTCAACCAAACTGTGGTCGTTCCCAAGGTGGTGG 127072 | || | || | | | || | |||||||||||| || ||| || || || || Sbjct 22077 CGCGGACCAATTCAAATGATGA-ATCGTCAACCAATGGAAGGACGTGCCAGAGACGGAGG 22019 Query 127073 ATTAAGATTTGGAGAAATGGAAAAAGATTGT--ATTTTGGTTCATGGAGCCACACAATTT 127130 ||| | ||||| ||||||||| |||||| | ||| | || || |||||||||||| Sbjct 22018 ATTGCGTTTTGGTGAAATGGAACGGGATTGTCAAATTTCG--CACGGTGCCACACAATTT 21961 Query 127131 TTAAATGAAAGAATGTTTTT---ATGT-TCAGATCCTTTTCAAATTGATGTGTGTACAAA 127186 | || |||| || ||| | || || ||||| | ||| || || | || | || Sbjct 21960 T----TGCGAGAACGTCTTTTCGAAGTGTCGGATCCATATCACGTTTATATTTGCAATAA 21905 Query 127187 TTGTGGAATGATT 127199 ||||||| ||||| Sbjct 21904 TTGTGGATTGATT 21892 >seq33217 Length=34003 Score = 84.2 bits (92), Expect = 3e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 182994 CTTACAATGCAGATTTTGATGGAGATGAAATGAATTTACATGTTCCTCAGTCGTATGAAG 183053 |||| ||||| |||||||||||||||||||||||||||||| |||| || | ||||||| Sbjct 25705 CTTATAATGCTGATTTTGATGGAGATGAAATGAATTTACATCTTCCACAAACCTATGAAG 25646 Query 183054 CTACCGCTGAA 183064 | | |||||| Sbjct 25645 CAAAAGCTGAA 25635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658127008087640