Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq32583 176 5e-39 seq31956 165 9e-36 >seq32583 Length=15821 Score = 176 bits (194), Expect = 5e-39 Identities = 270/385 (70%), Gaps = 0/385 (0%) Strand=Plus/Plus Query 18960 ACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAA 19019 ||| || ||||||| || ||||| |||||||| || | ||||| ||| || || Sbjct 6854 ACAAGCGAAATCACGGTGAAGTCCTTCGTCTCTTGAAATGAGCTCATTTGAATGAGTCAA 6913 Query 19020 ACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAA 19079 || ||||||| |||||| ||||| |||||||| || || |||||||| || || ||||| Sbjct 6914 TCCTGGCATCAATCCTCTCTTTTTCAACCAGAAAATTGAGGCAAATGAGCCGGAGAAGAA 6973 Query 19080 TATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATG 19139 ||| ||||| || || ||||| |||| || |||||| || | |||| |||| | Sbjct 6974 TATTCCTTCGACAGCAGCAAATGCAATTAATCTTTCAGCAAATGATGCATTTTTATCAGA 7033 Query 19140 AATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATT 19199 ||||||||||| |||||||||||||||||||| | || | | || | ||| Sbjct 7034 AATCCATTTCAAGGCCCAATCAGCCTTCTTTTTGATGAATTCGAATTCGAAAATTGCATT 7093 Query 19200 AAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACAT 19259 || || | | || | | ||| || ||| | || |||||| ||||| Sbjct 7094 GAAAAGTGAATGTCTTTCTTGTTCATCGCGAATATAAGTTTCAATCAATTTTGAATACAT 7153 Query 19260 TTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTAT 19319 |||||||||||| ||||| || || || || ||||| ||||| ||| ||||||| | Sbjct 7154 TTCTGAATGAATGTTTTCAATTGCAATTTGGAATCCATAAAAGAATCGGGCTTCTGAGAC 7213 Query 19320 CTGTACTTCACTACAAAATCTTTCG 19344 | |||||| | | ||||||||| Sbjct 7214 TTTGACTTCATTCGAGAATCTTTCG 7238 Score = 96.9 bits (106), Expect = 4e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 19345 ACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATA 19404 ||||| |||||||| || ||||||||| ||| || |||||||| || ||| | || | Sbjct 7394 ACCAAGTTTTCATTGACAATTCCATCAGAAGCAGCGAAAAATGCCAAAACACGAGAAACA 7453 Query 19405 AAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAATATCTTTAGATAAATCTACT 19464 || || ||||||| | | | | | | |||||| || |||||||| ||||| ||| Sbjct 7454 AAGAATTGTTCATCTCCGTTCATTTTTTCCCAATCTTTCATATCTTTTCCCAAATCAACT 7513 Query 19465 TCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACGATAT 19524 |||||||| ||||| || || || | || || || || | | ||| || | ||| | Sbjct 7514 TCTTCAACAGTCCAGAATGATGCAACAGCCTTCTTGTAAAACTCCCAAATTGTATGATGT 7573 Query 19525 TGTATAGGAAATATAACAAATCTATT 19550 | | || || ||||| |||| ||| Sbjct 7574 TTGAGTGGGAAAATAACGAATCGATT 7599 Score = 86.0 bits (94), Expect = 7e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 18671 TTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATT 18730 |||||||||||| ||| | ||| || |||||||| |||||||| || | ||||||| || Sbjct 6490 TTTGATATTCGGAAACACGTTTCTCGAAGAAATTTGTTTTTCCGTCGATTGATATATTTT 6549 Query 18731 CCATAAAATCAAATGGATTTTT 18752 |||| ||||| |||||||| || Sbjct 6550 CCATGAAATCGAATGGATTCTT 6571 >seq31956 Length=51777 Score = 165 bits (182), Expect = 9e-36 Identities = 604/955 (63%), Gaps = 7/955 (1%) Strand=Plus/Plus Query 47487 TTCCAATCCCAAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTA 47546 |||||||| || |||| | ||| ||| ||| | |||| | || | || ||| || Sbjct 35685 TTCCAATCACATTGATCAGTTGGTGTAACTCCCCACATATCAAACTGCAAAACTCCCTTC 35744 Query 47547 CTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTT 47606 | ||| || | |||||| ||| | || || ||||| || | ||||||||| Sbjct 35745 GAAACTGGACTTCCGTCATATGTGGAATAGGTTCCATAAAGTTTCGCTTGCTCACAACTT 35804 Query 47607 GCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCT 47666 | ||||||||| |||||| |||||||| || || | |||| | || || || || Sbjct 35805 TCATCCAATGCAGCATAATAAATTGTTTCGAAAATCCGTTTGTTCAAATCTCTGGCAGCT 35864 Query 47667 GATGATTCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATA 47726 || || ||||| || ||||||||||||||| ||||| | Sbjct 35865 TGAGAAGTGAATGGATATCTCATAAGCATGAAACAATCTGCCAATCCTTGTACACCTAAT 35924 Query 47727 CCAATTGGTCTATGAGTTTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATA 47786 |||||||| | |||| |||| ||| | ||||| || | |||||| | || || Sbjct 35925 CCAATTGGACGATGACGCATATTTGAATTTTTGGCTTCAGGAACTGGATAATAATTGATG 35984 Query 47787 TCTATAATTTTATTTAGANNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAA 47846 || || || || || | ||| ||| | ||| ||| Sbjct 35985 TCAATGATCTTGTTCAAGTTTCTTGTGAGAGCGCGAGCAACTTCAGCGAGTTTGACGAAA 36044 Query 47847 TCAAA---CTTGTTATTTATAACAAACCTATTAAGTGCTATAGATGCTAGATTACATACA 47903 || || ||| | | | ||||| | ||| | || || ||||| | |||||| || Sbjct 36045 TCGAAAGTCTTTTCAGGGGTTACAAATCGATTCAACGCAATTGATGCCAAATTACAAACC 36104 Query 47904 GCTACCTCATTTGGATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATA 47963 || || |||| |||| | | | || || ||||||| || | ||| ||||| || Sbjct 36105 GCAACTTCATCTGGACTCGAAACTTCCATAATTTCAGTGCACAAATTCGAGCATTTAATT 36164 Query 47964 GTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGT 48023 || || | |||||| |||||| | ||| || || || || ||| |||| Sbjct 36165 GTTCCAATATTTTGTTGATTAGTTTTTCGATTAGCCGCATCTTTATATGTGATATAAGGC 36224 Query 48024 GTTCCAGTTTCTATCTGAGATTCAATGATAGAT--TTCCAAACAGTCCTAGCCTTTATAA 48081 ||||||| || || ||| ||| || | || | ||| | | || || || | | Sbjct 36225 ATTCCAGTCTCAATTTGA--TTCGATACAACATGCTCCCACAATTTTCTCGCTTTCACAG 36282 Query 48082 CAGCTCTAGCTTTATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCAT 48141 ||| |||| || | || ||||| || || | || || || || || Sbjct 36283 TTTTTCTCACTTTTCCCTCTTTCTCATATTTGGTGTAAAGAGCTTCGAACTCTTCACCCC 36342 Query 48142 ACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTT 48201 | || | ||| | || ||||||| ||| ||||| | |||||||| || || ||| Sbjct 36343 AAACTTCATCGAGTCCTTGACATTCGCAAGGGCACATTAGCGACCAATCTTCGTCTCTTT 36402 Query 48202 TTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTA 48261 || | |||| || | |||||| | ||||||||| | || | ||| | || ||| Sbjct 36403 CGACGCGTTTCATGAACAAATCTGGGACCCAAAGAGCCAGGAAAAGATCGCGAGCTCTCT 36462 Query 48262 GTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATG 48321 |||||| |||| | || | || | | || || | ||||| |||||||||| Sbjct 36463 CTTCTTCTGGGCCAGTGTTTTTGCGGAGAGCGACGAATTCGAAAATATCGGCATGCCATG 36522 Query 48322 GTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGG 48381 |||| | ||| || || | ||||||| ||||| || || |||||||| | |||||||| Sbjct 36523 GTTCGAGATAAATAGCAAAGGCACCTGGACGTTTGTTTCCACCTTGATCGACATATCTGG 36582 Query 48382 CAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGT 48436 | || ||||| ||||| | | |||||| |||| |||||||||| | || ||||| Sbjct 36583 CTGTGTTGTTGTAAACGCGAAGCATTGGAACAAGACCATTTGATGTTCCGTTGGT 36637 Score = 150 bits (166), Expect = 2e-31 Identities = 309/459 (67%), Gaps = 3/459 (1%) Strand=Plus/Plus Query 46973 TTTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACC 47032 ||| || |||||||| | || | ||| |||| |||||||| ||||||||||| || Sbjct 35116 TTTGTCAACAGTAAATTGAACAGCATTCACAGCTGGTTTTGTTCTCAAATAATACATTCC 35175 Query 47033 AGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGG 47092 |||||| || || |||| |||||||||||||| || | | |||||| || Sbjct 35176 AGTCTTCAATCCCTTCTTCCAACCATAGAAATGCATTGATGTGATCGCGGCATAACTTGG 35235 Query 47093 TTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGC 47152 || | ||||||||||| | | ||| |||||||| || || || | ||| || || Sbjct 35236 TTTAGCCATATGAATATTCAAACTTTGTGATTGATCAATGAAAGCTCCGCGATCTGCAGC 35295 Query 47153 CATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTC 47212 ||| || | ||| | |||| | ||| ||||| |||||||| || | | ||| || || Sbjct 35296 CATCTCAATAATCTCTTTTTGCGATATTTCCCAAACTGTTTTGTACAACTCTTTGATTTC 35355 Query 47213 TTCTGGGA---GATTAGTATTTTGAATAGATCCTCCgttttctataattttgttttttaa 47269 ||| | | | | |||||||||| ||||| | | | || | | ||||| | Sbjct 35356 AGTTGGAATTTGTTCAATATTTTGAATCGATCCATTGCTGGCAATCAATCGATTTTTCAT 35415 Query 47270 ttcatttgaccaaagttttcgttcagttaatgtttttaaAAGATGAGGATTAACAATTTG 47329 |||| ||| | | ||||| || || || | ||| ||||| |||||||| Sbjct 35416 ATCATCATCCCATAATCCAAGTTCAACCAAATCCTTCAACAAATGTGGATTGACAATTTG 35475 Query 47330 AAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGATTC 47389 || || ||||| | || | || ||| ||||| || |||||||| || || || Sbjct 35476 GAAATCGCCAGACAAAACACGTCGAGAATAGATATTGGAAGTGTATGGTTCAATTGACTC 35535 Query 47390 ATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCAT 47428 ||| ||||| | |||||||| || || || || ||||| Sbjct 35536 ATTGTTTCCGAGGATTTGAGCTGTGGAAGCAGTTGGCAT 35574 Score = 134 bits (148), Expect = 2e-26 Identities = 224/324 (69%), Gaps = 0/324 (0%) Strand=Plus/Plus Query 48482 ACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCC 48541 ||| || ||||| || |||| || || | ||||| |||| || ||||| || ||||| Sbjct 36736 ACCGATTCCACCAGCATTTTTCGAGATCAATGCACATTGTTTCAGAGTATCGTAGATTCC 36795 Query 48542 TTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGT 48601 || |||||| |||| ||| | ||| ||| |||||||| || ||| ||| Sbjct 36796 CAAGATCGAATCATCGCTCATTGTTAGCAAAAAGCAAGATGACATTTGTGGCCGACGAGT 36855 Query 48602 TCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATA 48661 ||| || || || |||||||| || ||||| | | || |||| || | | || || Sbjct 36856 TCCCGAGTTGAACAATGTTGGCGAAGCATGTGTCATATATCTCTCCGACATGAGATTGTA 36915 Query 48662 TGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAACAT 48721 ||||| || | | ||| | ||| | || || || | ||| || | ||| ||||| Sbjct 36916 GGTTTCGATGGCTGCATCAACATCGTCTCCGTGAATTCCAACAGAAACTCTCATCAACAT 36975 Query 48722 ATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGT 48781 | ||| || | ||| || |||| | || |||||||||||||| ||| |||||| || Sbjct 36976 TTGTTGTGGGCGTTCGACGATTTGATCATCGATTTTCAAAAGATACGATCTTTCCAGAGT 37035 Query 48782 TTTAAAACCAAAATAGTTGTATGA 48805 ||| |||||||| || ||||||| Sbjct 37036 TTTGAAACCAAAGAAGGTGTATGA 37059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561873002384760