Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_016762.1 Length=49135 Score E Sequences producing significant alignments: (Bits) Value seq16821 116 1e-21 >seq16821 Length=3270 Score = 116 bits (128), Expect = 1e-21 Identities = 275/405 (68%), Gaps = 13/405 (3%) Strand=Plus/Plus Query 21169 CCGGCGTCACAAGCAGCGCCATGGGTTGAGCCTGCTGGTGGTGGACTACCTGCAGCTGCT 21228 |||||||| |||||||| || ||| | || || | ||| | |||||||| |||||||| Sbjct 1427 CCGGCGTCTGAAGCAGCGGCACGGGCTCCGCATGGTCGTGATCGACTACCTCCAGCTGCT 1486 Query 21229 GGAGAGCTCCGGCAAGTCC---ACTCG-CACCGAGGACGTCAGCGACATGTCCCGCCAGT 21284 |||| |||||| | || || | |||| ||||| || | ||||| Sbjct 1487 CTCGAGCGGAAAGAAGTCCGAGAGCCGTCAGC-AGGAGGTCAGTGAGTTCTCCCGTGCCC 1545 Query 21285 GCAAGCTGCTGGCGATGGAGCTTGGTATCCCCGTGATCGTGCTGTCGCAGCTCAACCGCT 21344 ||| ||||| ||| |||||| | | | || || |||| |||||||||||| ||||| Sbjct 1546 TCAAACTGCTCTCGAAGGAGCTCGATGTGCCGGTCATCGCGCTGTCGCAGCTGAACCGTG 1605 Query 21345 CCCTGGAGCAGCG-GCCGAACAAGCGACCGATGATGTCGGACCTGCGCGAGTCCGGGGCG 21403 | |||||||| |||| ||||| || ||| |||||||| || || || || Sbjct 1606 CGTCCGAGCAGCGCGCCG-ACAAGATGCCCGCGATCAGCGACCTGCGTGAATCGGGTTCG 1664 Query 21404 ATCGAGCAGGACGCCGATGTGATCATGTTCGTGTACCGCGA--CGAGGTCTACCACCCGG 21461 |||||||||||||||| || | || | || ||||||| | || |||| | || Sbjct 1665 CTCGAGCAGGACGCCGACATGGTGATCCTGCTGCACCGCGAGTCCAG--CTACGAGAAGG 1722 Query 21462 ATACCCAGTACCGCGGCGTGGCTGAGTTGATCATCGCGAAGCACCGCAACGGCGAGCCAA 21521 | | | | | ||||| ||| || | || | || ||||| || |||||| | Sbjct 1723 ACAATCCGCGCGCCGGCGAGGCCGACCTCATTCTGGCCAAGCAGCGAAACGGCCCCACCG 1782 Query 21522 GCACTGT-TCGGTGCGCGTTCCTGGGTAAGTACTCGCGATTCGAG 21565 |||| || |||| |||||||| ||| | |||||||| ||| || Sbjct 1783 GCACCGTCACGGT-CGCGTTCCAGGGCCACTACTCGCGCTTCCAG 1826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157047789443526