Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq32583 147 3e-30 >seq32583 Length=15821 Score = 147 bits (162), Expect = 3e-30 Identities = 344/514 (67%), Gaps = 14/514 (3%) Strand=Plus/Plus Query 37010 ATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTTATACCAATTAGTTTTAC 37069 ||| ||||||||||| || |||| |||| ||| | | || |||||||| | | || Sbjct 6689 ATCAGCAACAAATTCGATATATTGTGACATAAGTCGACAATTCATACCAATCATATCAAC 6748 Query 37070 TGGAATTGCATCT-TGAAGAAATAGTTTTTCTATTATTACAGCATCTTTAACTATATTAA 37128 || | || || | ||||| | || ||| ||| || |||||||| | || | | Sbjct 6749 AGGCAAAGCCTCAGTCAAGAATTC-TTGTTCGATTGAGACGGCATCTTTGATAATTTCAT 6807 Query 37129 CAATAACTTCTT----CAGTTGGGGGATATTTTAAAT-ATTTAA-ACAATAAACATGCAA 37182 || ||||| || || |||||| || || || |||| | ||| || | Sbjct 6808 AGATTCGTTCTTGGCTCAATT------TATTTTGAAGCATCGAATACAAAAGACAAGCGA 6861 Query 37183 AATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCA 37242 |||||| || | ||||| ||||| || | ||||| ||| || |||||||||| Sbjct 6862 AATCACGGTGAAGTCCTTCGTCTCTTGAAATGAGCTCATTTGAATGAGTCAATCCTGGCA 6921 Query 37243 TTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTT 37302 | || ||||| ||||| | ||| || |||| ||||| || || || ||||| || |||| Sbjct 6922 TCAATCCTCTCTTTTTCAACCAGAAAATTGAGGCAAATGAGCCGGAGAAGAATATTCCTT 6981 Query 37303 CAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGAAATCCAtt 37362 | || || |||||||| | | | | | | || | || | | | |||||||||||||| Sbjct 6982 CGACAGCAGCAAATGCAATTAATCTTTCAGCAAATGATGCATTTTTATCAGAAATCCATT 7041 Query 37363 tttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTTTAAGAGAA 37422 | | |||||| ||||| ||| | |||| | | |||||| || || || Sbjct 7042 TCAAGGCCCAATCAGCCTTCTTTTTGATGAATTCGAATTCGAAAATTGCATTGAAAAGTG 7101 Query 37423 AGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGT 37482 | | | |||||| ||| |||||||| ||||| | | ||||||||| || | Sbjct 7102 AATGTCTTTCTTGTTCATCGCGAATATAAGTTTCAATCAATTTTGAATACATTTCTGAAT 7161 Query 37483 GAATATTTTCAATAGCTATCTGAAAACCATAAAA 37516 |||| |||||||| || || || || |||||||| Sbjct 7162 GAATGTTTTCAATTGCAATTTGGAATCCATAAAA 7195 Score = 89.7 bits (98), Expect = 6e-13 Identities = 76/94 (81%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 36871 TCATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTT 36930 ||||||| || | |||||||||| ||| ||| | ||||| |||||||| ||||| | Sbjct 6475 TCATAACACCAGGTCTTTGATATTCGGAAACACGTTTCTCGAAGAAATTTGTTTTTCCGT 6534 Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATT 36964 | | ||||||||||||||| ||||| |||||||| Sbjct 6535 CGATTGATATATTTTCCATGAAATCGAATGGATT 6568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592068330506360