Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_018848.1 Length=37612 Score E Sequences producing significant alignments: (Bits) Value seq18931 86.0 2e-12 >seq18931 Length=1323 Score = 86.0 bits (94), Expect = 2e-12 Identities = 223/334 (67%), Gaps = 11/334 (3%) Strand=Plus/Plus Query 30169 ATGGCCGGAGACACCCCGATCACCGTTGTGGGCAACGTCGTTGCCGACCCCGAACTCAGG 30228 |||||||| || | | ||||||||| || || ||| | |||||||||||||||| | Sbjct 659 ATGGCCGGCGAGCCGCTGATCACCGTCGTCGGGAACCTGGTTGCCGACCCCGAACCGCGC 718 Query 30229 TTCACCCCCGCCGGCGCCGCCGTCGCGAACTTCCGGCTCGCCTCGACCCCCCGCACGTTC 30288 ||| || ||||| || | || |||||| |||||||||| || ||| | | Sbjct 719 GTCAGCCAGGCCGGTAAGTCCTGGGTGACGTTCCGGATCGCCTCGACGCCGCGCGTGCGC 778 Query 30289 GACCGCACCGCCAACGAATGGCGAGACGGCGAGACCCTGTTCCTGTCCGTCTCCG---TA 30345 ||||| | ||| ||| ||||||||| | ||||||| || || ||| | Sbjct 779 GACCGTCAGTCGGGCGACTGGTCGGACGGCGAGGCGCTGTTCC--TCGGTTGCCGCGCTT 836 Query 30346 TGGCGCCAGCAGGCCGAGAACGTCGCCGGATCCATCCACCGCGGCGAC-CGCGTGATCGT 30404 | | || || | || || ||| |||||| || | |||| || || || |||||||| Sbjct 837 TCG-GCGAGTACGCGGACAACATCGCCGCGTCGCT-CACCAAGGGCACGCGAGTGATCGT 894 Query 30405 CGTCGGCACCCTCGCCCAGCGCACGTA---CGAGAAGGACGGCGAGCGCCGAGCGTCCTA 30461 | ||| ||| ||||||||| || ||| || | || ||| || | || Sbjct 895 CCAGGGCCGTCTCACCCAGCGCAGCTACACCGACAACCAGGGGCAGCAGCGCACCTCGCT 954 Query 30462 CGAGGTCAAGGCCGAGGAAGTCGGCCCCGCGCTC 30495 ||| || ||| ||| || ||||||||| ||||| Sbjct 955 CGACCTCGAGGTCGAAGAGGTCGGCCCCACGCTC 988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 120188884057092