Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_018874.1 Length=211518 Score E Sequences producing significant alignments: (Bits) Value seq33096 84.2 3e-11 >seq33096 Length=37526 Score = 84.2 bits (92), Expect = 3e-11 Identities = 180/265 (68%), Gaps = 8/265 (3%) Strand=Plus/Plus Query 197022 CAGATCCTCGTCGCTAAAGCCCGTACCGATCTTACAAATGGATTCGTA--CATCTGGTTG 197079 || ||| ||||| | || || || ||||| ||||||| ||| || | |||| || Sbjct 11171 CAAATCTTCGTCAGTGAATCCGGTTCCGATTTTACAAACACTTTCATATTCTTCTG--TG 11228 Query 197080 TCGGGATTGTAACAGGCGAGTAAGAAAGCGCCGTAGGTTCCCGTTCTCTTTCCCACCCCG 197139 ||||| ||||| | | ||| | | || || || ||||| ||||| || || Sbjct 11229 GTTGGATTATAACAACCTAATAAATATCCACCATAAACACCAGTTCTTTTTCCAACACCA 11288 Query 197140 TTGAAGCCTCCGATAACCACCAGATCCAGAGTGTCGCACACCCCTTCCATGTAATCTTTC 197199 | | || || || || | ||||| ||| || | || || || | ||||||||| Sbjct 11289 AAATAAGCGCCCATCACAACTAAATCCAAAGTATCTCCAACTCCATCAACATAATCTTTC 11348 Query 197200 TTCAGTTTGAGCCAGCTTCTAGATCTCTTGGCAATCTCGTAGGTTGCGT--TTACGTCCA 197257 |||| ||| ||||| ||||| ||||| | | |||||| || ||||| | ||| |||| Sbjct 11349 TTCATTTTCAGCCAACTTCTTGATCTTCTCGAAATCTCATAAGTTGCTTCATTA--TCCA 11406 Query 197258 GGGTCTTGATCATCAATCCCTCGCA 197282 || ||||||||||| || || || Sbjct 11407 ATGTTTTGATCATCAAACCTTCACA 11431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 676445720391920