Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq13386 86.0 5e-12 >seq13386 Length=19191 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || || || | ||||| || || || ||||||||||| ||||| || || Sbjct 12199 CCTCCTCTGAGACGAAGAACCAAGTGGAGTGTTGATTCTTTTTGAATGTTGTAGTCGGAG 12258 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || ||| |||| ||||| || || ||||| || |||| || ||||| || | || Sbjct 12259 AGGGTTCTTCCGTCTTCCAATTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGTGGG 12318 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || || ||||| ||| || ||| ||| | | | || || ||||| || Sbjct 12319 ATTCCTTCTTTGTCTTGAATTTTAGCTTTGACATTTTCGATGGTATCAGAAGCCTCAACT 12378 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || || ||||| ||||||||||| ||||| || ||||| Sbjct 12379 TCAAGGGTGATGGTCTTTCCGGTCAAAGTTTTGACAAAGATTTGCAT 12425 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 ||| ||||| || || || |||||||| || ||||| || || || ||| | || Sbjct 13990 CAAAACCAAGTGAAGTGTTGATTCTTTTTGGATGTTGTAGTCGGAGAGGGTTCTTCCATC 14049 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 ||||| || || ||||| || |||| || ||||| || | |||| || |||||||| Sbjct 14050 TTCCAATTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGTGGAATTCCTTCCTTGTC 14109 Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733 ||||| || || | | | || || || || || |||| || || || Sbjct 14110 TTGGATCTTGGCCTTGACGTTCTCAATGGTATCAGAAGCTTCGACTTCCAAAGTGATGGT 14169 Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||||| ||||||||||| ||||| || ||||| Sbjct 14170 TTTTCCAGTCAAAGTTTTGACAAAGATTTGCAT 14202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380781796402557