Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq13386 120 3e-22 seq16010 96.9 3e-15 >seq13386 Length=19191 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| ||||| ||||| || || || |||||||| || ||| ||| |||| Sbjct 14203 AATGCAAATCTTTGTCAAAACTTTGACTGGAAAAACCATCACTTTGGAAGTCGAAGCTTC 14144 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | | ||||| || ||| ||||| || ||| | || ||| || Sbjct 14143 TGATACCATTGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATTCCACCAGACCA 14084 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||| ||| | ||||| || || ||||||||||||||| | ||| | |||| || || Sbjct 14083 ACAAAGATTGATCTTCGCCGGAAAACAATTGGAAGATGGAAGAACCCTCTCCGACTACAA 14024 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||| ||||||||||| || || ||| |||| || ||||| ||||||| || Sbjct 14023 CATCCAAAAAGAATCAACACTTCACTTGGTTTTGAGATTGAGAGGAGGAAT 13973 Score = 114 bits (126), Expect = 1e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| |||||||| || || |||||||| || ||| ||| |||| Sbjct 13746 ATGCAAATCTTTGTCAAAACATTGACTGGAAAAACCATCACATTGGAAGTTGAAGCTTCG 13687 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || |||| ||||||| || || ||||| ||| | || ||| || Sbjct 13686 GACACAATTGAAAATGTCAAAGCAAAAATTCAA-GATAAAGAAGGAATTCCACCAGACCA 13628 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||| ||| | || ||||| || ||||||||||||||| | |||| | |||| || || Sbjct 13627 ACAAAGATTGATTTTTGCCGGAAAACAATTGGAAGATGGAAGAACTCTCTCCGACTACAA 13568 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGT 28762 ||| |||||||| || || || ||| |||| Sbjct 13567 CATCCAAAAAGAGTCCACCCTCCACTTGGT 13538 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || || || || | || || ||||| || ||| ||| ||| |||| Sbjct 13237 ATGCAAATTTTCGTCAAGACCCTCACCGGCAAAACTATCACCTTGGAAGTCGAAGCTTCT 13178 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || ||||| || ||| |||||||| ||| | || ||| ||| Sbjct 13177 GACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAAGAAGGAATTCCACCAGACCAA 13118 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || ||| | ||||| || || ||||||||||||||| | ||| | | |||||||| Sbjct 13117 CAAAGATTGATCTTCGCCGGAAAACAATTGGAAGATGGCAGAACCCTTTCGGATTATAAT 13058 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 |||||||| ||||| || || ||| |||| || ||||| ||||||| || Sbjct 13057 ATTCAAAAGGAATCAACACTCCACTTGGTTTTGAGATTGAGAGGAGGAAT 13008 Score = 105 bits (116), Expect = 6e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| ||||| || || || || ||||| ||| ||| || |||| Sbjct 12425 ATGCAAATCTTTGTCAAAACTTTGACCGGAAAGACCATCACCCTTGAAGTTGAGGCTTCT 12366 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || |||| || |||| || |||||||| ||| | || ||| || Sbjct 12365 GATACCATCGAAAATGTCAAAGCTAAAATTCAA-GACAAAGAAGGAATCCCACCAGACCA 12307 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||| ||| | ||||| || || |||||||||||||| | ||| | |||| || || Sbjct 12306 ACAAAGATTGATCTTCGCCGGAAAACAATTGGAAGACGGAAGAACCCTCTCCGACTACAA 12247 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGT 28762 ||||||||||||||| || || ||| |||| Sbjct 12246 CATTCAAAAAGAATCAACACTCCACTTGGT 12217 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| || || || || | || || |||||||| ||| ||| ||| | || Sbjct 12198 AATGCAAATTTTCGTCAAGACCCTCACCGGCAAAACCATCACCTTGGAAGTCGAAGCCTC 12139 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | | ||||| || ||| ||||| || ||| | || |||||| Sbjct 12138 TGACACCATCGAAAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCAGATCA 12079 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||| | || ||||| || || ||||||||||||||| | ||| | |||| || || Sbjct 12078 ACAACGTCTCATCTTCGCCGGAAAACAATTGGAAGATGGTCGCACTCTCTCCGACTACAA 12019 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGT 28762 ||| ||||| ||||| ||||| || |||| Sbjct 12018 CATCCAAAAGGAATCGACTCTTCATTTGGT 11989 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| || || || ||| | || || ||||| || || ||| ||| |||| Sbjct 13975 AATGCAAATCTTCGTCAAGACACTCACTGGAAAAACAATCACACTTGAAGTTGAAGCTTC 13916 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || |||| || ||| ||||| || ||| | || |||||| Sbjct 13915 TGACACCATCGAAAATGTCAAAGCTAAGATCCAAGACAAGGAAGGAATCCCACCAGATCA 13856 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||| | || || ||||| || ||||||||||||||| || || | ||||| || Sbjct 13855 ACAACGTCTCATTTTTGCCGGAAAACAATTGGAAGATGGACGCACATTGTCTGATTACAA 13796 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGT 28762 ||| ||||| |||||||| || ||| |||| Sbjct 13795 CATCCAAAAGGAATCTACCCTTCACTTGGT 13766 >seq16010 Length=816 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| | || |||||||| || || ||||| || || |||| ||| |||| Sbjct 364 ATGCAAATCGTCGTCAAAACATTGACTGGAAAAACTATCACACTCGAAGTCGAAGCTTCC 305 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || |||| ||||||| || || || || ||| | || | |||| Sbjct 304 GACACAATTGAAAATGTCAAAGCAAAAATTCAA-GATAACGAAGGAATCCCACCACATCA 246 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||| ||| | || ||||| || ||||||||||||||| | |||| | | ||||| || Sbjct 245 ACAAAGATTGATTTTTGCCGGAAAACAATTGGAAGATGGAAGAACTCTTTCTGATTACAA 186 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGT 28762 ||| ||||| ||||| || || || |||| Sbjct 185 CATCCAAAAGGAATCAACACTCCATTTGGT 156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425230809303861