Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq31956 150 9e-32 >seq31956 Length=51777 Score = 150 bits (166), Expect = 9e-32 Identities = 314/458 (69%), Gaps = 16/458 (3%) Strand=Plus/Plus Query 24665 GTAAATTGCTTAGCTGATACTGCTGGTTTAGTTCTAAGATAATACATTCCAGTTTTCAAT 24724 |||||||| ||| || |||||||| ||||| | ||||||||||||||| |||||| Sbjct 35126 GTAAATTGAACAGCATTCACAGCTGGTTTTGTTCTCAAATAATACATTCCAGTCTTCAAT 35185 Query 24725 TTCTTCTTCCAACCGTAAAAATGCATTGATGTTAGTTTTGCA-ATGTTTGCTGATTC-TA 24782 |||||||||||| || |||||||||||||| | ||| | || | | | | || Sbjct 35186 CCCTTCTTCCAACCATAGAAATGCATTGATGTGATCGCGGCATAACTTGGTTTAGCCATA 35245 Query 24783 AAAACAAGTTCATCGATTGAGCTTGGCAAACAAAACGTTGTCTATCTGCAGCTAAGTCAA 24842 || | |||| ||| | ||| || ||| | | ||||||||| | |||| Sbjct 35246 TGAATA--TTCAAACTTTGTGATTGATCAATGAAAGCTCCGCGATCTGCAGCCATCTCAA 35303 Query 24843 TGATCGTTTTCATCGATATATCGTAAGCTGTTTTGTATCTCTCTTTTATCTCAGTTGGAA 24902 | ||| ||| |||||| || || |||||||||| |||||| || |||||||||| Sbjct 35304 TAATCTCTTTTTGCGATATTTCCCAAACTGTTTTGTACAACTCTTTGATTTCAGTTGGAA 35363 Query 24903 TACTTGCAATATTTTGAACTGATCCAT---TTTCTCTCAATAGATTCAATCTCATATTCG 24959 | | |||||||||||| ||||||| | | ||||| |||| | ||||| || Sbjct 35364 TTTGTTCAATATTTTGAATCGATCCATTGCTGGCAATCAATCGATT---TTTCATA-TCA 35419 Query 24960 GTGTCCAAAGAT-TAATTTTTTCAAGATCTCTAATCAAGTGTTTATTTATGATAATAAAT 25018 ||| | || || || | | ||| | | ||| ||| ||| | || || Sbjct 35420 TCATCCCATAATCCAAGTTCAACCAAATCCTTCAACAAATGTGGATTGACAATTTGGAAA 35479 Query 25019 TCTCCAGACAAAACTCTTC--TTATTGATAAGTTTGAAGTGAATGGTTCAAAACATTCAT 25076 || ||||||||||| | || || |||| || |||||| ||||||||| | |||| Sbjct 35480 TCGCCAGACAAAACACGTCGAGAATAGATA--TTGGAAGTGTATGGTTCAATTGACTCAT 35537 Query 25077 TATTTCCTAAGATTTGAGAAGTAGATGCTGTTGGCATT 25114 | ||||| | |||||||| || || || ||||||||| Sbjct 35538 TGTTTCCGAGGATTTGAGCTGTGGAAGCAGTTGGCATT 35575 Score = 86.0 bits (94), Expect = 3e-12 Identities = 156/226 (69%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 25933 CATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTT 25992 ||| || |||||||| | ||| | || || | ||| | |||||| ||||||| Sbjct 36413 CATGAACAAATCTGGGACCCAAAGAGCCAGGAAAAGATCGCGAGCTCTCTCTTCTTCTGG 36472 Query 25993 TCC-GTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAAT 26051 || ||| || || ||| | | ||| || |||||||| | ||||||||||| | || Sbjct 36473 GCCAGTGTTT-TTGCGGAGAGCGACGAATTCGAAAATATCGGCATGCCATGGTTCGAGAT 36531 Query 26052 AGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCAT 26111 | |||||||| |||| | ||| |||||||||||| || ||||| || || | | Sbjct 36532 AAATAGCAAAGGCACCTGGACGTTTGTTTCCACCTTGATCGACATATCTGGCTGTGTTGT 36591 Query 26112 TGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGT 26157 || |||| | ||||||||| | ||| |||| |||||| || Sbjct 36592 TGTAAACGCGAAGCATTGGAACAAGACCATTTGATGTTCCGTTGGT 36637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 252936506560925