Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq32419 159 4e-34 >seq32419 Length=45452 Score = 159 bits (176), Expect = 4e-34 Identities = 287/417 (69%), Gaps = 12/417 (3%) Strand=Plus/Minus Query 138158 TACAAATGGTGTGAGATGT--TTTGCTACACCAATAGGACCTACGCCAGGACCTCCACCT 138215 || |||||||| |||||| |||| || ||||| || || || ||||| || || || Sbjct 34361 TAAAAATGGTGCAAGATGTGATTTG--ACTCCAATTGGTCCAACTCCAGGGCCACCTCCA 34304 Query 138216 CCATGTGGAATACAGAATGTCTTATGTAAATTTAGATGACATACATCTGCACCATAGTCA 138275 |||||||||||||||||||| ||||| ||||| ||||| ||||||| ||||| || Sbjct 34303 CCATGTGGAATACAGAATGTTTTATGCAAATTGAGATGTGATACATCACTTCCATAATCT 34244 Query 138276 CATGGTTTTGCTAGACCTACCTGTGCATTTAGATTTGCACCATCGAGATATACCTGACCA 138335 | ||| | ||| || |||||||| | |||||| ||||||||||| || || || Sbjct 34243 CCTGGACGACACAAACCAACTTGTGCATTCATATTTGCTCCATCGAGATAAACTTGTCCG 34184 Query 138336 CCATTGTCATGAACGATCTTACATATCTGTCTGATGTTTGTTTCAAATACACCATGAGTC 138395 || | | |||||| | | ||| | | | |||| || ||| |||||||||||||| Sbjct 34183 CCGTGTTGATGAACAAGATCACAAACATCTTTGATCGATGATTCGAATACACCATGAGTT 34124 Query 138396 GATGGATATGTAATCATAAT----ACATGAGAGTTCAAATGTATTCATGATTGCTTTCTT 138451 || ||||| || | |||||| || || ||| ||||| || ||||| | Sbjct 34123 GAGGGATAAGTTACCATAATTGCGGCAAGATTTTTCGAATGTTTT----TCGGCTTTTTG 34068 Query 138452 CTCTAGATCTTTGATGTCTATGTTGCCATCATCATCACACTTGACACCTACAACTTTCAT 138511 | ||||| || | || || || | | ||| | | |||| | || |||||||| Sbjct 34067 TTGGAGATCACGGAAATTGATATTACCGTGTTGATCCGAATCGACAACAACTACTTTCAT 34008 Query 138512 TCCTGCCATGACTGCACTAGCAGGATTAGTTCCATGTGCTGACTCTGGTATCAGACA 138568 |||||| || ||| ||||| || ||||| || || ||| |||||||| Sbjct 34007 ATTTGCCATATGAGCTGAAGCTGGATTTGTGCCATGAGCAGAGGTTGGAATCAGACA 33951 Score = 91.5 bits (100), Expect = 2e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 139272 CCATGATATGCTGCATAGAATCCAGACATATTTGCGAGCAGTGCTTGTGCTGTGCAGATG 139331 |||||||| ||||||| | | ||| |||||| || | |||||||| || || || || Sbjct 31861 CCATGATAAACTGCATACATTGCAGCCATATTAGCCAAAAGTGCTTGAGCAGTACAAATA 31802 Query 139332 TTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGTAGTGC 139381 ||||| || ||||||||||||| |||||| || || | |||||| || || Sbjct 31801 TTACTTGTAGCTTTGTCTCTTCGAATATGTTGTTCGCGAGTTTGAAGAGC 31752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578755517408680