Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq32018 161 1e-34 >seq32018 Length=6499 Score = 161 bits (178), Expect = 1e-34 Identities = 228/317 (72%), Gaps = 10/317 (3%) Strand=Plus/Minus Query 47763 AAACTGACGGACAGAATATTGATTTCCTGTGGCAATAACAAAATCATCAGGTTCTTCTTG 47822 ||||| | |||| | |||| ||||| || ||||| |||||||||||||||| || | Sbjct 3747 AAACTCTCTGACACTAAATTGTTTTCCGGTCGCAATCACAAAATCATCAGGTTTGTCGTT 3688 Query 47823 TTGAAGCATTAACCACATAGCCTCGACATAATCTCTGGCATGTCCCCAGTCACGAAGTGC 47882 ||| | ||| |||||| || || ||||| ||||| ||||||||||| || | | || Sbjct 3687 TTGCAAAATTCTCCACATTGCTTCAACATATTCTCTCGCATGTCCCCAATCTCTCAAAGC 3628 Query 47883 A-TCAAGATTTCCTAGATATAAACAGTCTTGCTTACCTTCAGAGATTGCTTTT----AAT 47937 | ||||| ||||| || | | ||| ||||| | ||| | | || |||| | Sbjct 3627 ACTCAAG-TTTCCAAGTTCAACACATTCTTGTTGTCCT----AAACTGATTTTGGCGACC 3573 Query 47938 GCTCTTGTAATCTTACGAGTTACAAAAGTTTCACCACGTCTTGGAGATTCATGATTAAAA 47997 | | || || || || || ||||| ||||| || | |||||||||||||||||| ||| Sbjct 3572 GAACGGGTGATTTTTCGTGTCACAAAGGTTTCTCCTCTTCTTGGAGATTCATGATTGAAA 3513 Query 47998 AGAATACCACTACAGGCATACATTCCGTATGATTCACGATAGTTCTTTACTATCCAGTAC 48057 ||||| ||| |||| ||| |||| ||| | ||||| || || || ||||| || Sbjct 3512 AGAATTCCATTACAAGCAAACATATTGTAAGCCTCACGGTAATTGACAACAATCCAATAA 3453 Query 48058 CCATAGAGTTTTGCAAC 48074 ||||| | ||||||||| Sbjct 3452 CCATACATTTTTGCAAC 3436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665215233417880