Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq31956 87.8 2e-12 >seq31956 Length=51777 Score = 87.8 bits (96), Expect = 2e-12 Identities = 289/442 (65%), Gaps = 8/442 (2%) Strand=Plus/Minus Query 76501 TCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATG 76560 |||| | ||||| ||||||||||| || ||||| || |||||| | || || ||||| | Sbjct 35590 TCTTCTCATGGCTCCAATGCCAACTGCTTCCACAGCTCAAATCCTCGGAAACAATGAGTC 35531 Query 76561 CTTTGAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCAT 76620 ||||||||||||| | || ||||| || | | | || || || || Sbjct 35530 AATTGAACCATACACTTCCAATATCTATTCTCGACGTGTTTTGTCTGGCGATTTCCAAAT 35471 Query 76621 TGTCAACAAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAA 76680 |||||| || | | || || | | |||| | ||| | |||||||| Sbjct 35470 TGTCAATCCACATTTGTTGAAGGATTTGGTTGAACTTGGATTATGGGATGATGATATGAA 35411 Query 76681 GGATCTCATGGT-GAAAGCGGGTGGTTCCATTCAAAATATCTCAGATATCCCAGATGATA 76739 ||| || | | ||| ||| || ||||||||||| | | || ||| ||| | Sbjct 35410 AAATCGATTGATTGCCAGCAA-TGGATCGATTCAAAATATTGAACAAATTCCAACTGAAA 35352 Query 76740 TCAAGAATCTCTACCGCACAGTGTGGGAAATCAAGATGAAAGATGTCATTGACATGGCCG 76799 |||| | | ||| ||||| |||||||| | ||||| | ||||| ||||| | Sbjct 35351 TCAAAGAGTTGTACAAAACAGTTTGGGAAATATCGCAAAAAGAGATTATTGAGATGGCTG 35292 Query 76800 CAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTATTC--ATGGAAAGTCC 76857 ||||||| || |||||||||||| |||||| |||| ||||| |||| | || Sbjct 35291 CAGATCGCGGAGCTTTCATTGATCAATCACAAAGTTTGAA--TATTCATATGGCTAAACC 35234 Query 76858 AA-CGATGTCCAAGCTCTCTTCTATGCATATGTACGCGTGGAAACAGGGGCTCAAAACCG 76916 || ||| || | || | || |||||| | || | ||||| |||| | || || | Sbjct 35233 AAGTTATG-CCGCGATCACATCAATGCATTTCTATGGTTGGAAGAAGGGATTGAAGACTG 35175 Query 76917 GAATGTACTATCTCCGATCAAA 76938 ||||||| ||| | || |||| Sbjct 35174 GAATGTATTATTTGAGAACAAA 35153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596319346509920