Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq13386 159 6e-34 seq16010 147 4e-30 seq30935 113 8e-20 >seq13386 Length=19191 Score = 159 bits (176), Expect = 6e-34 Identities = 177/236 (75%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || || ||||| | ||||| |||| || | || | |||||| || || Sbjct 13511 ATTTGCATTCCTCCTCTGAGACGAAGGACCAAGTGGAGGGTGGACTCTTTTTGGATGTTG 13570 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 |||||||| | ||||| ||| || |||||||||||||||||||| ||||| ||||| Sbjct 13571 TAGTCGGAGAGAGTTCTTCCATCTTCCAATTGTTTTCCGGCAAAAATCAATCTTTGTTGG 13630 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || ||||||||||||||||| ||||| | ||| | |||| ||| || || ||| Sbjct 13631 TCTGGTGGAATTCCTTCTTTATCTTGAATTTTTGCTTTGACATTTTCAATTGTGTCCGAA 13690 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | |||||||| | || || ||||| || || | ||||| ||||| |||||||| Sbjct 13691 GCTTCAACTTCCAATGTGATGGTTTTTCCAGTCAATGTTTTGACAAAGATTTGCAT 13746 Score = 152 bits (168), Expect = 9e-32 Identities = 176/237 (74%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || || ||||| | ||||| |||| || | ||| | ||||| ||| || Sbjct 12189 AATTTGCATTCCTCCTCTGAGACGAAGAACCAAGTGGAGTGTTGATTCTTTTTGAATGTT 12248 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 |||||||| | ||||| || || |||||||||||||| || || ||||| ||||| Sbjct 12249 GTAGTCGGAGAGGGTTCTTCCGTCTTCCAATTGTTTTCCGGCGAAGATCAATCTTTGTTG 12308 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || || || ||||||||||| ||||| ||||| | ||| | |||| || ||||| || Sbjct 12309 GTCTGGTGGGATTCCTTCTTTGTCTTGAATTTTAGCTTTGACATTTTCGATGGTATCAGA 12368 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || ||||||||| || || || || || || || | ||||| ||||| |||||||| Sbjct 12369 AGCCTCAACTTCAAGGGTGATGGTCTTTCCGGTCAAAGTTTTGACAAAGATTTGCAT 12425 Score = 136 bits (150), Expect = 7e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || || |||||||||| | |||| || | ||| | || || ||||||||| || Sbjct 13008 ATTCCTCCTCTCAATCTCAAAACCAAGTGGAGTGTTGATTCCTTTTGAATATTATAATCC 13067 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | ||||| ||| || |||||||||||||| || || ||||| ||||| || || Sbjct 13068 GAAAGGGTTCTGCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGT 13127 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||||||||| ||||| || |||| || | |||| ||| || || |||| || Sbjct 13128 GGAATTCCTTCTTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCAGAAGCTTCG 13187 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| | || |||||||| || || || || || || || |||||||| Sbjct 13188 ACTTCCAAGGTGATAGTTTTGCCGGTGAGGGTCTTGACGAAAATTTGCAT 13237 Score = 134 bits (148), Expect = 2e-26 Identities = 172/237 (73%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || || |||||||||| | |||| || | ||| | ||||| || || Sbjct 13967 ATTTGCATTCCTCCTCTCAATCTCAAAACCAAGTGAAGTGTTGATTCTTTTTGGATGTTG 14026 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 |||||||| | ||||| ||| || |||||||||||||| || || ||||| ||||| Sbjct 14027 TAGTCGGAGAGGGTTCTTCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCTTTGTTGG 14086 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || |||||||| || ||||| || |||| || | || ||| ||||| ||| Sbjct 14087 TCTGGTGGAATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTATCAGAA 14146 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 | || ||||| | ||| || ||||| || || | ||||| ||||| ||||||||| Sbjct 14147 GCTTCGACTTCCAAAGTGATGGTTTTTCCAGTCAAAGTTTTGACAAAGATTTGCATT 14203 Score = 113 bits (124), Expect = 8e-20 Identities = 119/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || |||||||||||||||||||| | | |||||||| || || |||||||| || Sbjct 13819 ATCTTCCAATTGTTTTCCGGCAAAAATGAGACGTTGTTGATCTGGTGGGATTCCTTCCTT 13878 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 ||||| || || | ||| | |||| || || || |||| |||||||| || || || Sbjct 13879 GTCTTGGATCTTAGCTTTGACATTTTCGATGGTGTCAGAAGCTTCAACTTCAAGTGTGAT 13938 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 ||||| || || || || || || || ||||||||| Sbjct 13939 TGTTTTTCCAGTGAGTGTCTTGACGAAGATTTGCATT 13975 Score = 98.7 bits (108), Expect = 2e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 ||||| || || || ||||||||||| ||||| || |||| ||| | |||| || ||| Sbjct 14428 TGTTGGTCTGGTGGAATTCCTTCTTTGTCTTGAATCTTGGCTTTCACATTTTCGATGGTA 14487 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 || |||| || ||||| || || || || || || || || ||||| ||||| |||||| Sbjct 14488 TCAGAAGCTTCGACTTCAAGTGTGATGGTCTTTCCGGTAAGTGTTTTGACAAAAATTTGC 14547 Query 193359 ATTTTATTAGTAAAATAATTATTTTAAAT 193387 || | | | |||||| | |||| |||| Sbjct 14548 ATGATTTCTGAAAAATATTGATTTGAAAT 14576 Score = 93.3 bits (102), Expect = 8e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 |||||| | | ||||| |||| ||| | || | || || || || |||||||| Sbjct 11970 ACCACCACGAAGGCGAAGAACCAAATGAAGAGTCGATTCCTTTTGGATGTTGTAGTCGGA 12029 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 | || | | ||| || |||||||||||||| || || | | |||||||| || || Sbjct 12030 GAGAGTGCGACCATCTTCCAATTGTTTTCCGGCGAAGATGAGACGTTGTTGATCTGGTGG 12089 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 |||||||| || ||||| || |||| || | ||| || || || || | || || Sbjct 12090 GATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTTTCGATGGTGTCAGAGGCTTCGAC 12149 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 ||| | || || ||||| || || || || || || || ||||||||| Sbjct 12150 TTCCAAGGTGATGGTTTTGCCGGTGAGGGTCTTGACGAAAATTTGCATT 12198 >seq16010 Length=816 Score = 147 bits (162), Expect = 4e-30 Identities = 174/236 (74%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || || ||||| | ||||| |||| ||| | ||| | || || || || Sbjct 129 ATTTGAATTCCTCCTCTGAGACGAAGAACCAAATGGAGTGTTGATTCCTTTTGGATGTTG 188 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || || || | ||||| ||| || |||||||||||||||||||| ||||| |||||| Sbjct 189 TAATCAGAAAGAGTTCTTCCATCTTCCAATTGTTTTCCGGCAAAAATCAATCTTTGTTGA 248 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 | || || |||||||| |||||||| ||||| | ||| | |||| ||| || |||||| Sbjct 249 TGTGGTGGGATTCCTTCGTTATCTTGAATTTTTGCTTTGACATTTTCAATTGTGTCGGAA 308 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | || ||||| || || |||||||| || || | ||||| || | |||||||| Sbjct 309 GCTTCGACTTCGAGTGTGATAGTTTTTCCAGTCAATGTTTTGACGACGATTTGCAT 364 >seq30935 Length=6295 Score = 113 bits (124), Expect = 8e-20 Identities = 134/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 || || |||||||| | || | ||| || | |||||||||||| || || ||||| Sbjct 1449 ATGTTGTAGTCGGAAAGAGTACGTCCATCCTCGAGTTGTTTTCCGGCGAAGATCAATCTT 1390 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 |||||||| || || |||||||| || ||||| || |||| ||| | |||| || || Sbjct 1389 TGTTGATCTGGTGGGATTCCTTCCTTGTCTTGGATCTTGGCTTTGACATTTTCGATGGTG 1330 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 || || | ||| ||||| || || || || ||||| || || || || || || |||||| Sbjct 1329 TCCGAGGCCTCGACTTCGAGGGTAATTGTCTTACCCGTCAGAGTCTTGACGAAGATTTGC 1270 Query 193359 AT 193360 || Sbjct 1269 AT 1268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899277006224880