Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq32583 154 3e-32 seq13386 145 2e-29 seq16010 138 2e-27 >seq32583 Length=15821 Score = 154 bits (170), Expect = 3e-32 Identities = 274/389 (70%), Gaps = 13/389 (3%) Strand=Plus/Plus Query 49655 ATCGGCTACAAATTCAACATATTGTGACATTAATTCACAATTCATACCCAATAATTTAAA 49714 ||| || |||||||| | |||||||||||| | | |||||||||||| ||| || | || Sbjct 6689 ATCAGCAACAAATTCGATATATTGTGACATAAGTCGACAATTCATACC-AATCATATCAA 6747 Query 49715 T-GGTAATGCATCA-TCAATAAATTCtttttctatttctacagcttgtttaattatcata 49772 || || || ||| |||| || ||||| ||| ||| || || | ||| || || | Sbjct 6748 CAGGCAAAGCCTCAGTCAAGAA-TTCTTGTTCGATTGAGACGGCATCTTTGATAATTTCA 6806 Query 49773 attatattattttttgat--aatttatatttaatatgattcgcatatattaaACATGCAA 49830 || ||| || ||| ||||||| || || | ||| ||| | | ||| || | Sbjct 6807 --TAGATTCGTTCTTGGCTCAATTTATTTTGAA---GCATCGAATACAAAAGACAAGCGA 6861 Query 49831 AATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCA 49890 ||||| || | || ||||| || || || | ||||| | ||| |||||||||| Sbjct 6862 AATCACGGTGAAGTCCTTCGTCTCTTGAAATGAGCTCATTTGAATGAGTCAATCCTGGCA 6921 Query 49891 TTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCT 49950 | |||||||||||||| | ||| || ||||| ||||| | || |||||||| || | Sbjct 6922 TCAATCCTCTCTTTTTCAACCAGAAAATTGAGGCAAATGAGCCGGAGAAGAATATTCCTT 6981 Query 49951 CGACACACGCAAATGCTATTATTCTTGCTCCAAA-CATTAATTTATCATCTAATATCCAA 50009 ||||| |||||||| |||| |||| | |||| || |||| | ||| | ||||| Sbjct 6982 CGACAGCAGCAAATGCAATTAATCTTTCAGCAAATGATGCATTT-TTATCAGAAATCCAT 7040 Query 50010 TTTATAGCCCAATCTGCtttttttttGAT 50038 || | |||||||| || || |||||||| Sbjct 7041 TTCAAGGCCCAATCAGCCTTCTTTTTGAT 7069 >seq13386 Length=19191 Score = 145 bits (160), Expect = 2e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || ||||| ||||| | || || || | || | |||||| ||| || || || Sbjct 13517 ATTCCTCCTCTGAGACGAAGGACCAAGTGGAGGGTGGACTCTTTTTGGATGTTGTAGTCG 13576 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | |||| | |||| ||||||||||| || ||||| || ||||| ||||| || ||| Sbjct 13577 GAGAGAGTTCTTCCATCTTCCAATTGTTTTCCGGCAAAAATCAATCTTTGTTGGTCTGGT 13636 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||||||||||||| ||||| ||| ||||| || | || || | ||| Sbjct 13637 GGAATTCCTTCTTTATCTTGAATTTTTGCTTTGACATTTTCAATTGTGTCCGAAGCTTCA 13696 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | || |||||||| ||||| |||||||| | ||| || ||||| Sbjct 13697 ACTTCCAATGTGATGGTTTTTCCAGTCAATGTTTTGACAAAGATTTGCAT 13746 Score = 132 bits (146), Expect = 9e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | |||||| | || || || | |||| || || ||| || |||||| Sbjct 13745 ATACCACCACGAAGACGGAGAACCAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAATCA 13804 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || ||||| ||| |||| ||||||||||| || ||||| || | | |||||||| ||| Sbjct 13805 GACAATGTGCGTCCATCTTCCAATTGTTTTCCGGCAAAAATGAGACGTTGTTGATCTGGT 13864 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| || ||||| || ||| ||| ||||| || | || || | ||| Sbjct 13865 GGGATTCCTTCCTTGTCTTGGATCTTAGCTTTGACATTTTCGATGGTGTCAGAAGCTTCA 13924 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| || || || ||||| ||||| | ||| || | || || |||||| Sbjct 13925 ACTTCAAGTGTGATTGTTTTTCCAGTGAGTGTCTTGACGAAGATTTGCATT 13975 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || ||||| ||||| | || || || | || | ||||| || || || || Sbjct 12196 ATTCCTCCTCTGAGACGAAGAACCAAGTGGAGTGTTGATTCTTTTTGAATGTTGTAGTCG 12255 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | |||| | | || ||||||||||| || || ||||| ||||| ||||| || ||| Sbjct 12256 GAGAGGGTTCTTCCGTCTTCCAATTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGT 12315 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||||||| ||||| |||||| ||| ||||| || | ||| || | || Sbjct 12316 GGGATTCCTTCTTTGTCTTGAATTTTAGCTTTGACATTTTCGATGGTATCAGAAGCCTCA 12375 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| || || ||||| || || || || ||||| | ||| || ||||| Sbjct 12376 ACTTCAAGGGTGATGGTCTTTCCGGTCAAAGTTTTGACAAAGATTTGCAT 12425 Score = 116 bits (128), Expect = 7e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 192346 TCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAG 192405 ||||| ||| || || || || | |||| | |||| ||||||||||| || || ||| Sbjct 14012 TCTTTTTGGATGTTGTAGTCGGAGAGGGTTCTTCCATCTTCCAATTGTTTTCCGGCGAAG 14071 Query 192406 ATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTA 192465 || ||||| ||||| || ||||| |||||||| || ||||| || || || || || Sbjct 14072 ATCAATCTTTGTTGGTCTGGTGGAATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTC 14131 Query 192466 GTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATA 192525 || | ||| || | ||| ||||| | ||| |||||||| ||||| || ||||| | | Sbjct 14132 TCAATGGTATCAGAAGCTTCGACTTCCAAAGTGATGGTTTTTCCAGTCAAAGTTTTGACA 14191 Query 192526 AATATCTGCATT 192537 || || |||||| Sbjct 14192 AAGATTTGCATT 14203 Score = 100 bits (110), Expect = 6e-16 Identities = 137/190 (72%), Gaps = 1/190 (1%) Strand=Plus/Plus Query 192347 CTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGA 192406 |||| || ||||||||||| || | |||| |||| ||||||||||| || || |||| Sbjct 13049 CTTTTGA-ATATTATAATCCGAAAGGGTTCTGCCATCTTCCAATTGTTTTCCGGCGAAGA 13107 Query 192407 TTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAG 192466 | ||||| ||||| || ||||| ||||||||||| ||||| || || || ||||| Sbjct 13108 TCAATCTTTGTTGGTCTGGTGGAATTCCTTCTTTGTCTTGGATCTTGGCCTTGACATTTT 13167 Query 192467 TTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAA 192526 || | || || | ||| ||||| | || || ||||| || || | || || | | Sbjct 13168 CAATGGTGTCAGAAGCTTCGACTTCCAAGGTGATAGTTTTGCCGGTGAGGGTCTTGACGA 13227 Query 192527 ATATCTGCAT 192536 | || ||||| Sbjct 13228 AAATTTGCAT 13237 Score = 84.2 bits (92), Expect = 4e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | ||| || | || ||||| | ||| | || || ||| || || || || Sbjct 11970 ACCACCACGAAGGCGAAGAACCAAATGAAGAGTCGATTCCTTTTGGATGTTGTAGTCGGA 12029 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 | || || |||| ||||||||||| || || ||||| | | |||||||| ||||| Sbjct 12030 GAGAGTGCGACCATCTTCCAATTGTTTTCCGGCGAAGATGAGACGTTGTTGATCTGGTGG 12089 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 |||||||| || ||||| || || || || || || | || || | ||| || Sbjct 12090 GATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTTTCGATGGTGTCAGAGGCTTCGAC 12149 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||| | || |||||||| || || | || || | || || |||||| Sbjct 12150 TTCCAAGGTGATGGTTTTGCCGGTGAGGGTCTTGACGAAAATTTGCATT 12198 >seq16010 Length=816 Score = 138 bits (152), Expect = 2e-27 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 192306 AATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATC 192365 ||| || ||||| ||||| | || ||||| | || | || || ||| || ||||| Sbjct 134 AATTCCTCCTCTGAGACGAAGAACCAAATGGAGTGTTGATTCCTTTTGGATGTTGTAATC 193 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 ||| | |||| | |||| ||||||||||| || ||||| || ||||| ||||||| || Sbjct 194 AGAAAGAGTTCTTCCATCTTCCAATTGTTTTCCGGCAAAAATCAATCTTTGTTGATGTGG 253 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 ||| |||||||| |||||||| ||||| ||| ||||| || | || || | ||| Sbjct 254 TGGGATTCCTTCGTTATCTTGAATTTTTGCTTTGACATTTTCAATTGTGTCGGAAGCTTC 313 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTT 192521 ||||| || || || ||||| ||||| |||||||| Sbjct 314 GACTTCGAGTGTGATAGTTTTTCCAGTCAATGTTTT 349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984056698519650