Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq32583 154 3e-32 seq13386 140 6e-28 seq16010 129 1e-24 >seq32583 Length=15821 Score = 154 bits (170), Expect = 3e-32 Identities = 274/389 (70%), Gaps = 13/389 (3%) Strand=Plus/Plus Query 38957 ATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATAATTTAAA 39016 ||| || |||||||| | ||||||| |||| | | |||||||||||| ||| || | || Sbjct 6689 ATCAGCAACAAATTCGATATATTGTGACATAAGTCGACAATTCATACC-AATCATATCAA 6747 Query 39017 T-GGTAATGCATCA-TCAATAAATTCtttttctatttctacagcttgtttaattatcata 39074 || || || ||| |||| || ||||| ||| ||| || || | ||| || || | Sbjct 6748 CAGGCAAAGCCTCAGTCAAGAA-TTCTTGTTCGATTGAGACGGCATCTTTGATAATTTCA 6806 Query 39075 attatattattttttgat--aatttatatttaatatgattcgcatataGTAAACATGCAA 39132 || ||| || ||| ||||||| || || | ||| ||| | | ||| || | Sbjct 6807 --TAGATTCGTTCTTGGCTCAATTTATTTTGAA---GCATCGAATACAAAAGACAAGCGA 6861 Query 39133 AATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCA 39192 |||| || | |||||||| || || || | ||||| | ||| |||||||||| Sbjct 6862 AATCACGGTGAAGTCCTTCGTCTCTTGAAATGAGCTCATTTGAATGAGTCAATCCTGGCA 6921 Query 39193 TTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCT 39252 | |||||||||||||| | ||| || ||||| ||||| | || |||||||| || | Sbjct 6922 TCAATCCTCTCTTTTTCAACCAGAAAATTGAGGCAAATGAGCCGGAGAAGAATATTCCTT 6981 Query 39253 CCACACACGCAAATGCTATTATTCTTGCTCCAAA-CATTAATTTATCATCTAAAATCCAA 39311 | ||| |||||||| |||| |||| | |||| || |||| | ||| ||||||| Sbjct 6982 CGACAGCAGCAAATGCAATTAATCTTTCAGCAAATGATGCATTT-TTATCAGAAATCCAT 7040 Query 39312 TTTATGGCCCAATCTGCtttttttttGAT 39340 || | ||||||||| || || |||||||| Sbjct 7041 TTCAAGGCCCAATCAGCCTTCTTTTTGAT 7069 >seq13386 Length=19191 Score = 140 bits (154), Expect = 6e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || ||||| || || | || || || | || | |||||| || || || || Sbjct 13517 ATTCCTCCTCTGAGACGAAGGACCAAGTGGAGGGTGGACTCTTTTTGGATGTTGTAGTCG 13576 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || | | || ||||||||||| || |||||||| ||||| |||||||| ||| Sbjct 13577 GAGAGAGTTCTTCCATCTTCCAATTGTTTTCCGGCAAAAATCAATCTTTGTTGGTCTGGT 13636 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||||||||||||||| ||||| ||| ||||| || || || || | ||| Sbjct 13637 GGAATTCCTTCTTTATCTTGAATTTTTGCTTTGACATTTTCAATTGTGTCCGAAGCTTCA 13696 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | || |||||||| ||||| |||||||| | || || ||||| Sbjct 13697 ACTTCCAATGTGATGGTTTTTCCAGTCAATGTTTTGACAAAGATTTGCAT 13746 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || ||||| || || | || || || | || | ||||| ||| || || || Sbjct 12196 ATTCCTCCTCTGAGACGAAGAACCAAGTGGAGTGTTGATTCTTTTTGAATGTTGTAGTCG 12255 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || | |||| ||||||||||| || || || || ||||| |||||||| ||| Sbjct 12256 GAGAGGGTTCTTCCGTCTTCCAATTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGT 12315 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||||||||| ||||| |||||| ||| ||||| || ||||| || | || Sbjct 12316 GGGATTCCTTCTTTGTCTTGAATTTTAGCTTTGACATTTTCGATGGTATCAGAAGCCTCA 12375 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| || || ||||| || || || || ||||| | || || ||||| Sbjct 12376 ACTTCAAGGGTGATGGTCTTTCCGGTCAAAGTTTTGACAAAGATTTGCAT 12425 Score = 114 bits (126), Expect = 2e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | ||| || | || || || | |||| || || || || ||||| Sbjct 13745 ATACCACCACGAAGACGGAGAACCAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAATCA 13804 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | ||| | || ||||||||||| || |||||||| | | ||||| || ||| Sbjct 13805 GACAATGTGCGTCCATCTTCCAATTGTTTTCCGGCAAAAATGAGACGTTGTTGATCTGGT 13864 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| || ||||| || ||| ||| ||||| || || || || | ||| Sbjct 13865 GGGATTCCTTCCTTGTCTTGGATCTTAGCTTTGACATTTTCGATGGTGTCAGAAGCTTCA 13924 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| || || || ||||| ||||| | ||| || | ||| || |||||| Sbjct 13925 ACTTCAAGTGTGATTGTTTTTCCAGTGAGTGTCTTGACGAAGATTTGCATT 13975 Score = 105 bits (116), Expect = 1e-17 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || ||||||||||| || || || || ||||| |||||||| ||||| |||||||| || Sbjct 14048 TCTTCCAATTGTTTTCCGGCGAAGATCAATCTTTGTTGGTCTGGTGGAATTCCTTCCTTG 14107 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 ||||| || || || || || || ||||| || | ||| ||||| | ||| ||| Sbjct 14108 TCTTGGATCTTGGCCTTGACGTTCTCAATGGTATCAGAAGCTTCGACTTCCAAAGTGATG 14167 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| ||||| || ||||| | || || |||||| Sbjct 14168 GTTTTTCCAGTCAAAGTTTTGACAAAGATTTGCATT 14203 Score = 100 bits (110), Expect = 5e-16 Identities = 132/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 |||||||||||| || | | || | || ||||||||||| || || || || ||||| Sbjct 13055 AATATTATAATCCGAAAGGGTTCTGCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCT 13114 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 |||||||| ||||| ||||||||||| ||||| || || || ||||| || || Sbjct 13115 TTGTTGGTCTGGTGGAATTCCTTCTTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGT 13174 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 || || | ||| ||||| | || || ||||| || || | || || | ||| || || Sbjct 13175 GTCAGAAGCTTCGACTTCCAAGGTGATAGTTTTGCCGGTGAGGGTCTTGACGAAAATTTG 13234 Query 172067 CAT 172069 ||| Sbjct 13235 CAT 13237 >seq16010 Length=816 Score = 129 bits (142), Expect = 1e-24 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171839 AATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATC 171898 ||| || ||||| || || | || ||||| | || | || || || || ||||| Sbjct 134 AATTCCTCCTCTGAGACGAAGAACCAAATGGAGTGTTGATTCCTTTTGGATGTTGTAATC 193 Query 171899 TGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGG 171958 || | || || | | || ||||||||||| || |||||||| ||||| ||||| | || Sbjct 194 AGAAAGAGTTCTTCCATCTTCCAATTGTTTTCCGGCAAAAATCAATCTTTGTTGATGTGG 253 Query 171959 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTC 172018 ||| |||||||| |||||||| ||||| ||| ||||| || || || || | ||| Sbjct 254 TGGGATTCCTTCGTTATCTTGAATTTTTGCTTTGACATTTTCAATTGTGTCGGAAGCTTC 313 Query 172019 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| || || || ||||| ||||| |||||||| | || || ||||| Sbjct 314 GACTTCGAGTGTGATAGTTTTTCCAGTCAATGTTTTGACGACGATTTGCAT 364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904756306762200