Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_021298.1 Length=51252 Score E Sequences producing significant alignments: (Bits) Value seq17206 899 0.0 seq19565 187 8e-43 seq17873 82.4 3e-11 >seq17206 Length=1844 Score = 899 bits (996), Expect = 0.0 Identities = 1273/1774 (72%), Gaps = 33/1774 (2%) Strand=Plus/Plus Query 39573 GCCCGGCGAAGCAGGTCGGCCTGACCGAGGGTGTACCCGGCCATGACCTGCGCAACCTTC 39632 || ||||| || | ||||| || ||||| | | | ||||||| ||| || | | | Sbjct 1 GCGCGGCGGAGGATTTCGGCTTGGCCGAGCGAGAAGCCGGCCACCCGCTGAGCGATCGAC 60 Query 39633 TGCACCTGCTCCTGGTAGATGATGAGCTGGAAGGTCGGGTCCAGGATCTCCGACAGGGAC 39692 ||||||||||| |||||||| || | |||||| || ||||| ||| ||| | Sbjct 61 ATGACCTGCTCCTGATAGATGATCAGGCCGTAGGTCGTCTCGAGGATGTCCTTCAGCGGT 120 Query 39693 TCGGCCACCTCGGGGTGGATCGGCGTGATCGCCTGCTGCCCGTTCTTACGGAGGGCGTAG 39752 || | | |||||| |||||||| ||||||| |||| | |||||||| || || |||||| Sbjct 121 TCCTCGAGCTCGGGATGGATCGGGGTGATCGGCTGCAGACCGTTCTTGCGCAGCGCGTAG 180 Query 39753 TTCGTGTGAGACCCCACGCCCATCGGACCCGGACGGTACAGCGCGACGACGGCCGAGATG 39812 || ||||| || | | ||||| || ||||| ||||||||||||| || ||||||||| Sbjct 181 TTGGTGTGTGAGTCGGCACCCATGGGGCCCGGGCGGTACAGCGCGAGCACTGCCGAGATG 240 Query 39813 TCCTCGAAGTTGTCCGGCTTCAGCAGACGGAGCAGTGAGCGCATCGCGCCGCCGTCGAGC 39872 |||||||||||||| ||||||| || || ||||| |||||| | ||||||||||||| Sbjct 241 TCCTCGAAGTTGTCGGGCTTCATGAGGCGCAGCAGGCCGCGCATGGGGCCGCCGTCGAGC 300 Query 39873 TGGAAGACCGAGAGCGTGTCGCCCCTGGCCAGCAGCTCGTACGTCGCGGGGTCGTCCAGG 39932 ||||| || |||||||||||| | ||| ||||| ||||| | | | |||||| || Sbjct 301 TGGAACACGCCGAGCGTGTCGCCGCGGGCGAGCAGTTCGTAGGAGGGCGCGTCGTCGAGC 360 Query 39933 GGGATGTTCTCCAGGTCGACGTGCTCCCCACGGTTGAGGCGGATGTTCTCGACCGCGTCG 39992 | | ||| ||||||| | || || |||||||||||||||||||||| |||||| Sbjct 361 TCAAGGCGCTCGAGGTCGAGTTCTTCGCCGCGGTTGAGGCGGATGTTCTCGAGCGCGTCC 420 Query 39993 CCCATGATCGTGAGGTTCCGGAGCCCGAGGAAGTCCATCTTCAGCAGGCCCAGAGCCTCG 40052 |||||||||||||| || ||||| |||||||||||||| | |||||| || ||||| Sbjct 421 GAGATGATCGTGAGGTTGCGCAGCCCCAGGAAGTCCATCTTGATCAGGCCGAGGCCCTCG 480 Query 40053 CAGCTCGGGTAGTCGAACTGCGTGATCGTCGCGCCGTCCTGCGGTCGCACCCACACCGGG 40112 ||| ||||||||||||||||||||| || |||||||||| || | || |||| Sbjct 481 CAGGTCGGGTAGTCGAACTGCGTGACGATCTGGCCGTCCTGCTCGCGTTTCTGCAGCGGG 540 Query 40113 ATGTGGTCGACCAGAGGCTCGTCGGACATGATCACACCGGCTGCGTGCACACCCATCTGC 40172 ||| ||||| ||| || ||| |||||||| || || || |||||||| ||| |||| Sbjct 541 ATGATGTCGATCAGCGGGTCGCTCGACATGATGACGCCCGCGGCGTGCACGCCCCACTGC 600 Query 40173 CGGACGAGACCTTCGAGACCGAGCGCGGTGTCGATGACCTCCTTGGCGTCCGGGTCGGAG 40232 || || || ||||| |||||||| |||||| || ||| || || || || | Sbjct 601 CGCTTCAGGCCCTCGAGGCCGAGCGCCGTGTCGTACACGAGCTTCGCCTCGGGATCCTCG 660 Query 40233 CCGTAGATGCCCCGGATCTCGGCGGCCTCCTCGTACCGAGGGTGCTCGGCGTTGAAGATC 40292 | | | |||||| |||||| ||||||| ||| || |||||||| | || | ||| Sbjct 661 GTGAGCACGGCCCGGAACTCGGCCGCCTCCTTGTAGCGGGGGTGCTCCGGGTCGGTGATG 720 Query 40293 CCGTCGAGGGGCATCGAGTTGCCCATCACGTCGGCCGGGTACGCCTTGGTCAGCTTCTCG 40352 || ||| || || || |||| ||| ||| ||| |||||| || ||||||||| Sbjct 721 CCCGAGAGCGGGATGTCCTTCGCCATGACGGCGGGCGGCATCGCCTTCGTGAGCTTCTCG 780 Query 40353 CCGACCTGGAAGGGCTTGTCCAGCACGCGGGCTGCGTCCTTCATCGCGTTGCGCGCCTTG 40412 || | ||| || | | |||||||| | |||||||||| ||| | || |||| Sbjct 781 CCCATGCCGAACGGGAAGCCGAGCACGCGCGACGCGTCCTTCAGCGCCTGCTTCGACTTG 840 Query 40413 ATCCGTCCGTACGTCGCGATCTGCGCGACCTTGTCGGCCCCGTACTTCCGGGTGACGTAC 40472 ||| ||||| || |||||||||| || ||| | ||||||||| |||||||||| Sbjct 841 ATCGTGCCGTAGGTGACGATCTGCGCCACGCGCTCGTCGCCGTACTTCTCGGTGACGTAC 900 Query 40473 TGGATCACCTCGCCACGACGCCGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACG 40532 | ||| |||||||| ||||| || ||||||||||||| ||||| |||||||| || ||| Sbjct 901 TTGATGACCTCGCCGCGACGGCGATCATCGAAGTCGACGTCGAAGTCGGGCATCGAGACG 960 Query 40533 CGCTCGGGGTTCAGGAACCGCTCGAAGATGAGTCCGTGCTCCAGCGGGTCGAGGTCGGTG 40592 || |||||||| ||||| |||||||||||||||||||||| |||||| ||||| |||||| Sbjct 961 CGGTCGGGGTTGAGGAATCGCTCGAAGATGAGTCCGTGCTGCAGCGGATCGAGATCGGTG 1020 Query 40593 ATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAGCCTCGCCCAGGGCCGACCCAG 40652 || | | | |||||||||||| || || || | ||||| || || ||||| || | | Sbjct 1021 ATGCGCATGGCGTAGGCGACCATGGATCCCGCGCCCGAGCCACGACCGGGGCCCACGCGG 1080 Query 40653 ACGCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGGAAG 40712 | |||||| ||||||| |||| ||||||||| ||||| ||||||||||| |||||| Sbjct 1081 ATGCCGTTGTCCTTCGACCAGTTGATGAAGTCGGCGACCACGAGGAAGTAGCCGGGGAAG 1140 Query 40713 CCCATCTGGATGATCATGTCGATCTCGTACTGGAGCTGCTTGCCGTGCTCGTAGTCCG-- 40770 |||||||| |||| | | |||||||||||| | |||||||| || | |||| | Sbjct 1141 CCCATCTGCGTGATGACGCCGATCTCGTACTCGGCCTGCTTGC---GCACCGAGTCGGGG 1197 Query 40771 -TGCCGTTCGGGTACCGACGACGCGCGCCTCGGGCGACCTCGTCCTCGAACCAGGTGATC 40829 ||||| ||||||| || || || ||||||| | ||||||| || | Sbjct 1198 ATGCCGCTCGGGTAGCGGTAGTGCAACCCCTTCTCGACCTCCTTGATGAACCAGCTGTCC 1257 Query 40830 TCCGTGTGCCCCTCGGGCACCGGGAACTTCGGCATCAGGTT----CTCGTGCTCGAACAT 40885 || || | || ||||||||||| | |||||| ||| |||| | |||| Sbjct 1258 TCGGTCTCGCCATCGGGCACCGGATAGCGCGGCATGTAGTTGGCCGACGTG-TTGAACTC 1316 Query 40886 GCCGGTGGTGTCGACCATCTCGGCGATGTCCAGCGTGGTCCGCATCCCCCACTCCCAGAT 40945 | | || | || |||||||||| |||||| | || | | | | | Sbjct 1317 GACATTGCAG-CG-----CTCGGCGATGAGGAGCGTGTT----GTCGCACGCGTCGGGGA 1366 Query 40946 GGGAGAGGAGTCGATG-GCCGCCATCTCGGCGGCCGACTTCAGGTAGTACCCGGAGCCCT 41004 | | ||| | ||| |||| ||||||||| || | ||| |||||||| || ||||| | Sbjct 1367 AGTCGCGGAAT--ATGTGCCG-CATCTCGGCCGCGGTCTTGAGGTAGTAGCCCGAGCCGT 1423 Query 41005 CGAAGCGGAAGCGGTGAGGGTTATCGAGCGTGGTGCCGGTCTGGACGCACAGCAGTGCAT 41064 |||| |||||||| |||| ||||| || ||| | ||| ||||| ||||| || Sbjct 1424 CGAACTTGAAGCGGTTCGGGTCGTCGAGGCGGGAGCCCGACTGCACGCAGAGCAGCGC-- 1481 Query 41065 CGTGAGCGACCGACTCCTCGGC--GGTG-ACGTAGTGGGAATCGTTCGTGACCACCGGAG 41121 || | ||| || | ||||| ||| |||||||| |||||||||| | || | | Sbjct 1482 CGAGTGCG-CCTCGGCGTCGGCCTCGTGCACGTAGTGCAGATCGTTCGTGGCGACGAGCG 1540 Query 41122 TGAGCGCGAGGTGCTTCCCGAGCCGGTACAGATCCTCGCGGACCCGGCGCTCGATCTCGA 41181 || | ||||| | ||| | | || || |||||||||||||||| |||| Sbjct 1541 GGATCTTGAGGTCGCGCGCGATCTTGATGAGGTCGGACTGGACCCGGCGCTCGATGTCGA 1600 Query 41182 TGCCGTGGTCCATGAGTTCGAGCAGGTAGCGCTCGCGACCCAGGATCTCCAGCCAGTCGC 41241 |||||||||||||| ||| | | || ||| | || | ||| ||| | | ||| Sbjct 1601 GCCCGTGGTCCATGAGCTCGCAGAAGAAGTTCTCTCTGCCGAAGATGTCCTGGAACTCGG 1660 Query 41242 CAGCGGCCCTGAC-TGCCTCGTCGTACTGACCCAGGTTCAGCCTGGTCATGACTTCGCCA 41300 | || | |||| | |||||||||||||| || ||| ||| | |||| || ||||| Sbjct 1661 CCGCCG-CCTGCCGGGCCTCGTCGTACTGCCCGAGGCGCAGGCGGGTCTGGATCTCGCCC 1719 Query 41301 CCAGGGCACCCCGTGGTTCCGATGATGCCCTCGC 41334 ||||| ||||| || ||||| ||||| || Sbjct 1720 GAGGGGCAACCCGTCGTGGTGATGAGGCCCTTGC 1753 >seq19565 Length=416 Score = 187 bits (206), Expect = 8e-43 Identities = 255/355 (72%), Gaps = 6/355 (2%) Strand=Plus/Minus Query 39264 GGCGGCAGGACCCGAAGGCCCATGCGCCGAGACTCGCCGAGGTACGTGGCCATCTTGTTC 39323 |||||||| ||| | ||||||||| || ||||| |||||| || | ||||| | Sbjct 366 GGCGGCAGCACCTTGATGCCCATGCGGCGGCACTCGTTGAGGTAGAGCGCGAGCTTGTCC 307 Query 39324 TTGTCGTCGCCCACCGAGGTGAGCGCAGCCGCCATGTACTCGGCTGGGTAGTGCGTCTTC 39383 || |||||| || |||||| ||||||||||||||||| ||||||||| |||| Sbjct 306 TTCGAGTCGCCGACGCTCGTGAGCAGCGCCGCCATGTACTCGGCCGGGTAGTGCTCCTTC 247 Query 39384 AGCCACGCCGTGCGGTACGCGATGAGTCCGTACGCCGCCGAGTGCGCCTTGTTGAAGGCG 39443 || | || || | ||| || || |||||||| |||||||| ||||||||||| ||| Sbjct 246 AGGTAGGCGGTCCAGTAGCTGACGACGCCGTACGCGGCCGAGTGGGCCTTGTTGAACGCG 187 Query 39444 TAGCCAGCGAACGGGACCAGCACGTCCCACACTGCCTGGATGGCACCGTCCGAGTAGCCT 39503 ||| | | |||||||| ||| | |||||| | |||| ||| || | || || | || Sbjct 186 TAGTCCGAGAACGGGAGCAGGATGTCCCAGAGCGCCTTGATCGCCGCCTCGGAAAATCCG 127 Query 39504 CGCTCGCGCGCTCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGAACCTCGG---GCTTC 39560 ||||| | || | |||| | || ||| |||| | || ||||| |||| Sbjct 126 CGCTCCTTCATGCCGCCCGAGAAGCCCTCGTACTGCTTGTCGAG---CTCGGACTTCTTC 70 Query 39561 TTCTTGCCCATCGCCCGGCGAAGCAGGTCGGCCTGACCGAGGGTGTACCCGGCCA 39615 |||||||||||||| ||||| || | |||||| || ||||| | | | ||||||| Sbjct 69 TTCTTGCCCATCGCGCGGCGGAGGATGTCGGCTTGGCCGAGCGAGAAGCCGGCCA 15 >seq17873 Length=3337 Score = 82.4 bits (90), Expect = 3e-11 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 38816 GAGCGACGCCTCCAGCCCGGCGAGCGGGTGGTCGGAGACGTACAGGCCCAGCATCTCCCG 38875 ||||| ||||| |||||| |||||||||||||||||||| |||||||||||||| || Sbjct 487 GAGCGCGGCCTCGAGCCCGCGCAGCGGGTGGTCGGAGACGTAGAGGCCCAGCATCTCGCG 428 Query 38876 CTCGA 38880 ||||| Sbjct 427 CTCGA 423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163819489756212