Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_021299.1 Length=80955 Score E Sequences producing significant alignments: (Bits) Value seq18015 803 0.0 seq19961 473 6e-129 >seq18015 Length=1372 Score = 803 bits (890), Expect = 0.0 Identities = 742/940 (79%), Gaps = 0/940 (0%) Strand=Plus/Minus Query 59263 CGTGCCATCAACTGGAACCGCGTCTTTGACGACAAGGATCTTGAGGTCTGGAACCGGTTG 59322 || || |||||||||||||| || ||||| ||||| || |||||||||||||| || Sbjct 1202 CGGGCGATCAACTGGAACCGGATCGAGGACGAGAAGGACCTCGAGGTCTGGAACCGCCTG 1143 Query 59323 ACCAACAACTTCTGGCTGCCAGAGAAGATCCCTGTCTCCAACGACATCCCGGCCTGGGGC 59382 |||||||||||||||||| |||||| | || | || |||||| | | | | |||| Sbjct 1142 GTCAACAACTTCTGGCTGCCCGAGAAGGTGCCGCTGTCGAACGACGTGCAGTCGTGGGCG 1083 Query 59383 ACGCTGACGGAGGAAGAGCAAGTCCTCACGATGCGGGTCTTCACCGGCCTGACGATGCTC 59442 ||||| ||| | | ||||| | ||||| ||||| || ||||| || || || ||||| Sbjct 1082 ACGCTCACGCCGCAGGAGCAGCTGCTCACCATGCGCGTGTTCACGGGTCTCACCCTGCTC 1023 Query 59443 GACACGATCCAGGGCACCGTGGGTGCTGTGAGCCTGATCCCTGACGCGATCACGCCGCAC 59502 ||||||||||||||||| || || || || |||||||| ||||||||||| |||||| Sbjct 1022 GACACGATCCAGGGCACGGTCGGCGCCGTCTCGCTGATCCCCGACGCGATCACTCCGCAC 963 Query 59503 GAGGAGGCGGTGTACACGAACATCGCGTTCATGGAGTCGGTGCACGCGAAGAGCTACAGC 59562 |||||||| || ||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 962 GAGGAGGCCGTCTACACGAACATCGCGTTCATGGAGTCGGTGCACGCCAAGAGCTACTCG 903 Query 59563 AACATCTTCTCGACGCTGTGCTCGTCCAAGGAGATCGACGCGGCGTTCCGCTGGTCGGAG 59622 |||||||||||||||||||| | |||||||||||| |||||||||||||||| Sbjct 902 TCGATCTTCTCGACGCTGTGCTCCACGCAGGAGATCGACGACGCGTTCCGCTGGTCGGTT 843 Query 59623 GAGAATCCGAACCTGCAACGCAAGGCTCAGATCGTCCTGGACTACTACCAGGGTGACGAT 59682 ||||| ||||||||||| ||||| |||| || | ||||||||| |||| ||||| Sbjct 842 GAGAACCCGAACCTGCAGAAGAAGGCGTCGATCATCGTCGACTACTACGAGGGCGACGAC 783 Query 59683 CCGCTGAAGCGGAAGGTGGCCTCGACGTTGCTGGAGGGGTTCCTGTTCTACTCGGGCTTC 59742 ||||||||||| ||| | ||||| ||| |||| || |||||||||||||||||||||| Sbjct 782 CCGCTGAAGCGCAAGATCGCCTCCACGCTGCTCGAATCGTTCCTGTTCTACTCGGGCTTC 723 Query 59743 TACCTGCCGATGTACTGGTCTAGTCGGGGGAAGCTGACGAACACGGCCGACATGATCCGG 59802 |||||||| ||||||||||| || | | ||||| || |||||||| ||| | ||||| Sbjct 722 TACCTGCCCATGTACTGGTCGAGCCACGCCAAGCTCACCAACACGGCAGACCTCATCCGC 663 Query 59803 CTCATCATTCGTGACGAGGCGGTGCACGGCTACTACATCGGATACAAGTTCCAGCGCGGC 59862 |||||||| || |||||||| |||||||||||||||||||| |||||||||||| ||| Sbjct 662 CTCATCATCCGCGACGAGGCCGTGCACGGCTACTACATCGGCTACAAGTTCCAGAAGGGC 603 Query 59863 CTGGAGACTCAGAACGAGGCTCGCCGCGAGGAGCTGAAGGACTACACGTACGGTCTGCTA 59922 || |||| ||| ||||| || ||| ||||||| ||||| ||||| | | || | Sbjct 602 CTCGAGAACGAGACCGAGGAGCGTCGCCAGGAGCTCAAGGATTACACCTTCTCGCTCATG 543 Query 59923 CTCGAGTTGTACGACAACGAGATTGAGTACACGCAGGATCTGTACGACGGCGTGGGACTG 59982 ||| ||||||| |||||| | ||||||| || || |||||| ||||| || Sbjct 542 TACGAACTGTACGAGAACGAGGTCAAGTACACCGCCGACCTCTACGACCCGGTGGGCCTC 483 Query 59983 ACTGAGGATGTCAAGATGTTCCTGCGCTACAACGCCAACAAGGCGCTGATGAATCTCGGC 60042 || ||||| ||||||| |||||||| ||||||||| ||||||||||| ||||| |||||| Sbjct 482 ACCGAGGACGTCAAGAAGTTCCTGCACTACAACGCGAACAAGGCGCTCATGAACCTCGGC 423 Query 60043 TACGAGGCGCTGTTCCCGCGCGACGAAACCGAGGTGAATGCGGCGATCTTGGCGGCACTG 60102 |||||| || ||||||| || ||||| ||||| |||||||| || |||| ||| Sbjct 422 TACGAGCCGATGTTCCCCAAGGAGATGACCGACGTGAACCCGGCGATCCTGTCGGCGCTG 363 Query 60103 TCCCCTGGCGGGGACGAGAACCACGACTTCTTCTCGGGCTCTGGCAGCACGTATGTGATT 60162 || || || ||||||||||| ||||||||||||||||| || | |||| || || Sbjct 362 TCGCCGAACGCCGACGAGAACCATGACTTCTTCTCGGGCTCGGGTTCCTCGTACGTCATC 303 Query 60163 GGCAAGGCTGAGGTTACGGAAGACGAGGATTGGGACTTCT 60202 |||||||| | | || || |||||||| |||||||||| Sbjct 302 GGCAAGGCCGTCGCCACCGAGGACGAGGACTGGGACTTCT 263 >seq19961 Length=5435 Score = 473 bits (524), Expect = 6e-129 Identities = 687/956 (72%), Gaps = 28/956 (3%) Strand=Plus/Plus Query 59267 CCATCAACTGGAACCGCGTCTTTGACGACAAGGATCTTGAGGTCTGGAACCGGTTGACCA 59326 |||||||||||||||| || | ||||||||||| || ||||| ||||||||| |||| Sbjct 4211 CCATCAACTGGAACCGGGTGCTCGACGACAAGGACCTGGAGGTGTGGAACCGGCTGACGG 4270 Query 59327 ACAACTTCTGGCTGCCAGAGAAGATCCCTGTCTCCAACGACATCCCGGCCTGGGGCA-CG 59385 |||||||||||||| |||||| | || |||| ||||||||||| || ||| || || Sbjct 4271 CGAACTTCTGGCTGCCCGAGAAGGTTCCGCTCTCGAACGACATCCCCGCATGG--CAGCG 4328 Query 59386 C-TGA---CGGAGGAAGAGCAAGTCCTCACGATGCGGGTCTTCACCGGCCTGACGATGCT 59441 | ||| | ||||| | ||| ||| ||||||||||| |||||||| || |||||||| Sbjct 4329 CATGAGCCCTGAGGA-GCGCAC--CCTGACGATGCGGGTGTTCACCGGGCTCACGATGCT 4385 Query 59442 CGACACGATCCAGGGCACCGTGGGTGCTGTGAGCCTGATCCCTGACGCGATCACGCCGCA 59501 |||||| | |||| || || |||| | ||| ||||| || ||| ||| ||| Sbjct 4386 CGACACCGTGCAGGCGACGGTCGGTGAGATCTGCCAGATCCAGGATGCGCAGACGGAGCA 4445 Query 59502 CGAGGAGGCGGTGTACACGAACATCGCGTTCATGGAGTCGGTGCACGCGAAGAGCTACAG 59561 |||||||||||| |||||||||||||| |||||| |||||||||||||| |||| Sbjct 4446 CGAGGAGGCGGTCTACACGAACATCGCCTTCATGCAGTCGGTGCACGCGCGCTCCTACTC 4505 Query 59562 CAACATCTTCTCGACGCTGTGCTC---GTCCAAGGAGATCGACGCGGCGTTCCGCTGGTC 59618 | | |||||||| || ||| |||| |||||||||| ||| | || ||| | Sbjct 4506 CTCGGTGTTCTCGACCCTCACCTCCACGTCC---GAGATCGACGAGGCATATCGGTGGGC 4562 Query 59619 GGAGGAGAATCCGAAC--CTGCAACGCAAGGCTCAGATCG--TCCTGGACTACTACCAGG 59674 || || || ||| | ||||| | | ||| | || | || | ||||| | Sbjct 4563 GGTGGGCAA--CGATCTGCTGCA--GGAGCGCTGCAAGCGGGTGCTCGCGCACTACTCCG 4618 Query 59675 GTGACGATCCGCTGAAGCGGAAGGTGGCCTCGACGTTGCTGGAGGGGTTCCTGTTCTACT 59734 || |||||||||||||| |||||| | ||||| ||||| | | | ||| |||| Sbjct 4619 GTCCGGATCCGCTGAAGCGCAAGGTGTCGTCGACCCTGCTGTCGTCGCTGCTGCTCTATG 4678 Query 59735 CGGGCTTCTACCTGCCGATGTACTGGTCTAGTCGGGGGAAGCTGACGAACACGGCCGACA 59794 |||||||||| |||||| || ||| || | | || ||||| ||||| ||||||| Sbjct 4679 CGGGCTTCTATCTGCCGCTGCACTTCTCGGTGCACGCGACCCTGACCAACACCGCCGACA 4738 Query 59795 TGATCCGGCTCATCATTCGTGACGAGGCGGTGCACGGCTACTACATCGGATACAAGTTCC 59854 || |||| || ||| | || ||| |||||||||||||||||||| || |||||||||| Sbjct 4739 TGGTCCGCCTGATCCTGCGCGACAAGGCGGTGCACGGCTACTACTCGGGCTACAAGTTCC 4798 Query 59855 AGCGCGGCCTGGAGA--CTCAGAACGAGGCTCGCCGCGAGGAGCTGAAGGACTACACGTA 59912 |||| || || | || ||| | |||| | |||| ||| || |||| ||| Sbjct 4799 AGCGGGGGCTCGCGAAGCTCGG--CGAGACGGAGCGCGCCGAGATGCGCGACTTCACCCT 4856 Query 59913 CGGTCTGCTACTCGAGTTGTACGACAACGAGATTGAGTACACGCAGGATCTGTACGACGG 59972 || ||||| ||| | ||||| ||| | | ||| || ||| || ||||| Sbjct 4857 CGCGCTGCTCGACGACCTCTACGAACTGGAGCTCGCCTACTCGGGGGAGCTCTACGAGCC 4916 Query 59973 CGTGGGACTGACTGAGGATGTCAAGATGTTCCTGCGCTACAACGCCAACAAGGCGCTGAT 60032 | | ||||| | || || || | ||||| |||| |||||||| ||||||||||| || Sbjct 4917 CCTCGGACTCATGGACGACGTGGCGGTGTTCGTGCGTTACAACGCGAACAAGGCGCTCAT 4976 Query 60033 GAATCTCGGCTACGAGGCGCTGTTCCCGCGCGACGAAACCGAGGTGAATGCGGCGATCTT 60092 ||| || |||||| ||||| |||||||| || | ||| |||||| | | |||| | Sbjct 4977 GAACCTGGGCTACCCGGCGCGGTTCCCGCCGGAGCAGACCCGGGTGAACCCCGAGATCCT 5036 Query 60093 GGCGGCACTGTCCCCTGGCGGGGACGAGAACCACGACTTCTTCTCGGGCTCTGGCAGCAC 60152 ||||| || || || || | |||||||||||||||||||||||||| || ||| | | Sbjct 5037 CGCGGCGCTCTCGCCCGGGAGCGACGAGAACCACGACTTCTTCTCGGGTTCCGGCTCCTC 5096 Query 60153 GTATGTGATTGGCAAGGCTGAGGTTACGGAAGACGAGGATTGGGACTTCTAGTCCC 60208 || ||||| ||| | |||| || |||||||| |||||||||||| ||| Sbjct 5097 CTACGTGATGGGCGTCGGAGAGGACACCACCGACGAGGACTGGGACTTCTAGACCC 5152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 258825297058284